Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq64713 152 2e-32 >seq64713 Length=190342 Score = 152 bits (168), Expect = 2e-32 Identities = 247/347 (71%), Gaps = 9/347 (3%) Strand=Plus/Plus Query 42652 GCCCACCGCCAGGGCGTTGACCAGCGGATTGGCCTGATAGACGGCATCGAACACG-GTCT 42710 ||||||||||| |||||||| || ||| | | |||| || | ||| ||| |||| Sbjct 138546 GCCCACCGCCATCGCGTTGACGAGAATGTTGCCGTCATAGCGGGTGTGGAA-ACGCGTCT 138604 Query 42711 CGCCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGACGC 42770 ||||||| |||||| |||| |||||||||| || || ||| | ||||| Sbjct 138605 GCCCGCCGACCGTCGGCACGCCGAACGAGTTGCCGTAACCGCCGACGCCCGCGACGACGC 138664 Query 42771 CGTGCACGACCCGCGCCGTGTCG--GGGTCG-TCGGCCGCGCCGAAGCGCAGGGCGTCCA 42827 | |||| | |||||| || | | |||| ||||||||| ||| || | | Sbjct 138665 CCGATACGAGATGG--CGTGTCTTCGGATGGCTCGGGT-CGCCGAAGCTCAGTGCATTGA 138721 Query 42828 TGACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCG 42887 | ||||| ||| || || ||||||| || | |||||| | ||||||||| || || | Sbjct 138722 GGCACGCGATCGGCCGCGCACCCATGGTGAACACGTCGCGCAGGATGCCGCCGACGCCGG 138781 Query 42888 TCGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAACG 42947 | | ||||||||| | ||||||||| | |||||||||||| |||||| |||||| Sbjct 138782 TGGTCGCGCCCTGATACGGCTCGATGTAGCTGGGGTGGTTGTGGCTCTCCATCTTGAAGA 138841 Query 42948 TGACCGCCCATCCCTCGCCGACGTCGATGACGCCCGCGTTCT-GCCC 42993 ||||| || ||||||| |||||||||||||||||||| |||| Sbjct 138842 CAACCGCGAGGCCATCGCCGATGTCGATGACGCCCGCGTTCTCGCCC 138888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148128041278742