Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq42187 136 9e-27 seq57661 134 3e-26 seq37095 134 3e-26 seq65323 131 4e-25 seq38453 86.0 1e-11 >seq42187 Length=1775 Score = 136 bits (150), Expect = 9e-27 Identities = 551/858 (64%), Gaps = 24/858 (3%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||| | | | || ||||| ||||| |||||||| | ||| |||| ||| Sbjct 2 TTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGG 61 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGAC 242994 || |||| ||||| ||||| | | ||| | ||||| || |||| || Sbjct 62 ACGGCCGAAGAAGTCGATCTGAGCTCCGACATGAAGCACTGG---GAATCGCTCAGCAAC 118 Query 242995 GACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTG 243054 ||||| | || |||||||| ||| | || | || ||||| | | ||| || || ||| Sbjct 119 GACGAGAGGCACTTCATCAAGCACGTCCTGGCCTTCTTCGCGGCCAGCGACGGCATCGTG 178 Query 243055 ATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATT 243113 || || || || | || ||| | |||| || ||| || ||||| || || Sbjct 179 GCCGAGAACCTCGCCGGCCG-CTTCATGATGGAGGTCCAGGTGCCCGAGGCGCGCTGCTT 237 Query 243114 TTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCGA 243173 || | | ||||| || ||| ||||| || || || | || || ||||| Sbjct 238 CTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTCATCGA 297 Query 243174 CGCGCTTATTTCAGATGAACAAGA-GCGAA--ACGAGCTTTTCGACGCCATCGAAAACAT 243230 | | || ||| | || || | | ||| || || ||| ||||||||| | | | Sbjct 298 CACC--TACGTCA-AGGACCACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGT 354 Query 243231 TCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTA------GAACCCGGTA- 243283 || |||| | || || || | ||||| ||||||| | || |||| Sbjct 355 GCCCTCGGTCAAGAAGAAAGCCGACTGGGCCATGAAGTGGATCAACAAGGAGGGCGGTGC 414 Query 243284 --AATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGG 243341 | | || || ||||| ||| ||| | | ||| || || || | || ||||| Sbjct 415 CGAGACCTTCGCCGAGCGCCTCATCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGG 474 Query 243342 GAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTC 243401 || |||||| ||||||||||||| ||| || ||||||| ||||||| | Sbjct 475 CAGCTTCTGCTCCATCTTTTGGCTCAAGAAGCGCGGCCTGATGCCCGGCCTCGCCTTCAG 534 Query 243402 TAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTC 243461 ||||||| | ||||| |||||||||||||| ||| | || | || | || | Sbjct 535 TAACGAGATGATCAGCCGCGACGAGGGCCTCCACTGCGACTTTGCCTGCCTCCTCTACAC 594 Query 243462 AAAGCTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGA 243521 | |||| ||||||| | ||| | ||| || |||||| || || || || Sbjct 595 CATGCTCGTCAACAAGCCCTCGACCGACGTGCCCAAGCAGATCATCCTCGAGGCCGTCGA 654 Query 243522 AAACGAAAAGGAATTCATTTGCGA--CGCTATTCCATGCCGGCTTATTGGCATGAACTCT 243579 | || ||||||||| | ||| |||| | ||| || || ||||||||| | Sbjct 655 GATTGAGAAGGAATTCGTGACCGAGTCGCTGCCCGTGGCC--CTCATCGGCATGAACGCC 712 Query 243580 GAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTAT 243639 || |||||| | ||||||||||| ||||| ||||||||| | || ||| || || | Sbjct 713 GACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGCCGCCCTCGGCTGC 772 Query 243640 GAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGG 243699 ||||| |||||| | ||||| || | | ||||||||||| || || | || Sbjct 773 GAGAAGCACTACAACCAGACCAACCCGTTCCCGTGGATGGAGCTCATCTCCCTCGAGGGC 832 Query 243700 AAAACTAACTTCTTCGAA 243717 || || |||||||||||| Sbjct 833 AAGACCAACTTCTTCGAA 850 >seq57661 Length=1717 Score = 134 bits (148), Expect = 3e-26 Identities = 550/857 (64%), Gaps = 24/857 (3%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||| | | | || ||||| ||||| |||||||| | ||| |||| ||| Sbjct 1716 TTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGG 1657 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGAC 242994 || |||| ||||| ||||| | | ||| | ||||| || |||| || Sbjct 1656 ACGGCCGAAGAAGTCGATCTGAGCTCCGACATGAAGCACTGG---GAATCGCTCAGCAAC 1600 Query 242995 GACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTG 243054 ||||| | || |||||||| ||| | || | || ||||| | | ||| || || ||| Sbjct 1599 GACGAGAGGCACTTCATCAAGCACGTCCTGGCCTTCTTCGCGGCCAGCGACGGCATCGTG 1540 Query 243055 ATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATT 243113 || || || || | || ||| | |||| || ||| || ||||| || || Sbjct 1539 GCCGAGAACCTCGCCGGCCG-CTTCATGATGGAGGTCCAGGTGCCCGAGGCGCGCTGCTT 1481 Query 243114 TTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCGA 243173 || | | ||||| || ||| ||||| || || || | || || ||||| Sbjct 1480 CTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTCATCGA 1421 Query 243174 CGCGCTTATTTCAGATGAACAAGA-GCGAA--ACGAGCTTTTCGACGCCATCGAAAACAT 243230 | | || ||| | || || | | ||| || || ||| ||||||||| | | | Sbjct 1420 CACC--TACGTCA-AGGACCACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGT 1364 Query 243231 TCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTA------GAACCCGGTA- 243283 || |||| | || || || | ||||| ||||||| | || |||| Sbjct 1363 GCCCTCGGTCAAGAAGAAAGCCGACTGGGCCATGAAGTGGATCAACAAGGAGGGCGGTGC 1304 Query 243284 --AATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGG 243341 | | || || ||||| ||| ||| | | ||| || || || | || ||||| Sbjct 1303 CGAGACCTTCGCCGAGCGCCTCATCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGG 1244 Query 243342 GAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTC 243401 || |||||| ||||||||||||| ||| || ||||||| ||||||| | Sbjct 1243 CAGCTTCTGCTCCATCTTTTGGCTCAAGAAGCGCGGCCTGATGCCCGGCCTCGCCTTCAG 1184 Query 243402 TAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTC 243461 ||||||| | ||||| |||||||||||||| ||| | || | || | || | Sbjct 1183 TAACGAGATGATCAGCCGCGACGAGGGCCTCCACTGCGACTTTGCCTGCCTCCTCTACAC 1124 Query 243462 AAAGCTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGA 243521 | |||| ||||||| | ||| | ||| || |||||| || || || || Sbjct 1123 CATGCTCGTCAACAAGCCCTCGACCGACGTGCCCAAGCAGATCATCCTCGAGGCCGTCGA 1064 Query 243522 AAACGAAAAGGAATTCATTTGCGA--CGCTATTCCATGCCGGCTTATTGGCATGAACTCT 243579 | || ||||||||| | ||| |||| | ||| || || ||||||||| | Sbjct 1063 GATTGAGAAGGAATTCGTGACCGAGTCGCTGCCCGTGGCC--CTCATCGGCATGAACGCC 1006 Query 243580 GAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTAT 243639 || |||||| | ||||||||||| ||||| ||||||||| | || ||| || || | Sbjct 1005 GACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGCCGCCCTCGGCTGC 946 Query 243640 GAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGG 243699 ||||| |||||| | ||||| || | | ||||||||||| || || | || Sbjct 945 GAGAAGCACTACAACCAGACCAACCCGTTCCCGTGGATGGAGCTCATCTCCCTCGAGGGC 886 Query 243700 AAAACTAACTTCTTCGA 243716 || || ||||||||||| Sbjct 885 AAGACCAACTTCTTCGA 869 >seq37095 Length=1954 Score = 134 bits (148), Expect = 3e-26 Identities = 550/857 (64%), Gaps = 24/857 (3%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||| | | | || ||||| ||||| |||||||| | ||| |||| ||| Sbjct 1107 TTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGG 1166 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGAC 242994 || |||| ||||| ||||| | | ||| | ||||| || |||| || Sbjct 1167 ACGGCCGAAGAAGTCGATCTGAGCTCCGACATGAAGCACTGG---GAATCGCTCAGCAAC 1223 Query 242995 GACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTG 243054 ||||| | || |||||||| ||| | || | || ||||| | | ||| || || ||| Sbjct 1224 GACGAGAGGCACTTCATCAAGCACGTCCTGGCCTTCTTCGCGGCCAGCGACGGCATCGTG 1283 Query 243055 ATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATT 243113 || || || || | || ||| | |||| || ||| || ||||| || || Sbjct 1284 GCCGAGAACCTCGCCGGCCG-CTTCATGATGGAGGTCCAGGTGCCCGAGGCGCGCTGCTT 1342 Query 243114 TTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCGA 243173 || | | ||||| || ||| ||||| || || || | || || ||||| Sbjct 1343 CTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTCATCGA 1402 Query 243174 CGCGCTTATTTCAGATGAACAAGA-GCGAA--ACGAGCTTTTCGACGCCATCGAAAACAT 243230 | | || ||| | || || | | ||| || || ||| ||||||||| | | | Sbjct 1403 CACC--TACGTCA-AGGACCACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGT 1459 Query 243231 TCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTA------GAACCCGGTA- 243283 || |||| | || || || | ||||| ||||||| | || |||| Sbjct 1460 GCCCTCGGTCAAGAAGAAAGCCGACTGGGCCATGAAGTGGATCAACAAGGAGGGCGGTGC 1519 Query 243284 --AATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGG 243341 | | || || ||||| ||| ||| | | ||| || || || | || ||||| Sbjct 1520 CGAGACCTTCGCCGAGCGCCTCATCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGG 1579 Query 243342 GAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTC 243401 || |||||| ||||||||||||| ||| || ||||||| ||||||| | Sbjct 1580 CAGCTTCTGCTCCATCTTTTGGCTCAAGAAGCGCGGCCTGATGCCCGGCCTCGCCTTCAG 1639 Query 243402 TAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTC 243461 ||||||| | ||||| |||||||||||||| ||| | || | || | || | Sbjct 1640 TAACGAGATGATCAGCCGCGACGAGGGCCTCCACTGCGACTTTGCCTGCCTCCTCTACAC 1699 Query 243462 AAAGCTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGA 243521 | |||| ||||||| | ||| | ||| || |||||| || || || || Sbjct 1700 CATGCTCGTCAACAAGCCCTCGACCGACGTGCCCAAGCAGATCATCCTCGAGGCCGTCGA 1759 Query 243522 AAACGAAAAGGAATTCATTTGCGA--CGCTATTCCATGCCGGCTTATTGGCATGAACTCT 243579 | || ||||||||| | ||| |||| | ||| || || ||||||||| | Sbjct 1760 GATTGAGAAGGAATTCGTGACCGAGTCGCTGCCCGTGGCC--CTCATCGGCATGAACGCC 1817 Query 243580 GAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTAT 243639 || |||||| | ||||||||||| ||||| ||||||||| | || ||| || || | Sbjct 1818 GACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGCCGCCCTCGGCTGC 1877 Query 243640 GAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGG 243699 ||||| |||||| | ||||| || | | ||||||||||| || || | || Sbjct 1878 GAGAAGCACTACAACCAGACCAACCCGTTCCCGTGGATGGAGCTCATCTCCCTCGAGGGC 1937 Query 243700 AAAACTAACTTCTTCGA 243716 || || ||||||||||| Sbjct 1938 AAGACCAACTTCTTCGA 1954 >seq65323 Length=85180 Score = 131 bits (144), Expect = 4e-25 Identities = 293/435 (67%), Gaps = 14/435 (3%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 ||||| ||||| ||||||| | | ||| || || || | || || || ||| Sbjct 60682 TTTGCCGAGCGCCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 60623 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 || ||||||| ||||| ||| ||| | ||||| ||||||| | || |||||| Sbjct 60622 TGTTCCATCTTCTGGCTCAAGAAACGCGGTCTCATGCCCGGCCTCGCCTTCTCCAACGAG 60563 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 ||||||| |||||||||||||| ||| | |||| | || |||| | |||| Sbjct 60562 CTCATCAGCCGCGACGAGGGCCTGCACGCAGAGTTTGCCTGCCTCCTGTACAGTATGCTC 60503 Query 243469 CAGAACAAGCTACCATTCGAAACG-GTCAAA-CAAATCATCACAGAAGCAGTTGAAAACG 243526 |||||||| | ||| || | |||| || ||| || || || || || | || Sbjct 60502 GTGAACAAGCCGTCGAGCGA--CGTGCCAAAGCAGATCGTCCTCGAGGCCGTCGAGATCG 60445 Query 243527 AAAAGGAATTCATTTGCGACGCTATTCCATGCCGG-----CTTATTGGCATGAACTCTGA 243581 | ||||| || || ||| | || | |||| || || ||||||||| | | Sbjct 60444 AGAAGGAGTT----TGTCACGG-AGTCGCTCCCGGTGGCGCTCATCGGCATGAACGCGGG 60390 Query 243582 ACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGA 243641 |||||| | ||||||||||| || || |||||||| | || | || || || | || Sbjct 60389 CCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGTCTGCTCGTGGCACTCGGGTGCGA 60330 Query 243642 GAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAA 243701 ||| |||||| ||| ||||||||| ||| |||||||| || || || | || || Sbjct 60329 CAAACACTACAACGCCACGAACCCCTTCCCCTGGATGGAGCTGATCTCACTCGAGGGCAA 60270 Query 243702 AACTAACTTCTTCGA 243716 || ||||||||||| Sbjct 60269 GACCAACTTCTTCGA 60255 >seq38453 Length=38892 Score = 86.0 bits (94), Expect = 1e-11 Identities = 208/315 (66%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 149165 GAGATTCGTCGGCATGACTGAGACGAAATTACATCCATATTGTTTTCTGTAAGCATCACA 149224 |||||| ||||||||||| || ||| | | || || || | |||||| || Sbjct 14032 GAGATTGGTCGGCATGACGCTGATGAAGTCGCTGCCGTACTGGGCGCGGTAAGCCTCCGC 13973 Query 149225 CATCTCGATTCCGGCGATTTTCGCTATCGCGTATGGTTTGTTAGTGGGTTCGAGAAATCC 149284 ||||| || ||||||||||| || ||||| || || | ||| || || || || | Sbjct 13972 CATCTTGACGCCGGCGATTTTGGCGATCGCATAGGGCTCGTTGGTCGGCTCAAGCGTGTC 13913 Query 149285 TGTCATCAGATATTCTTCCTTGATAGGATTTTGAGCTTCTTTTGGGTAAATGCAACTGCT 149344 |||| ||| | || || | || | |||| || || |||||||| | Sbjct 13912 GGTCAGCAGCGAATCCTCGCGCAGCGGCTGCGGAGCCAGCTTCGGATAAATGCACGAGGA 13853 Query 149345 ACCGAGAAACACGAGTTTTTTCACTCCGAACATTTTGGACGCATGAATGACATTCGTCTG 149404 |||||||||| || || | || ||| || | | |||||||| ||| || ||| Sbjct 13852 GCCGAGAAACAGCAGCTTCTCGACGCCGTGCACGTGCGCCGCATGAAGGACGTTGGTCGC 13793 Query 149405 AATCATCAGATTATCGTGAATAAAATCGCCCCCGAAGGAGTTGTTCGCGTGAATACCTCC 149464 |||| ||||| |||| ||| || ||| | | | || |||||| ||| |||||| || Sbjct 13792 GATCAGGAGATTTTCGTAAATGAATTCGGCGCGCAGGGTGTTGTTGGCGACAATACCGCC 13733 Query 149465 TACTTTTGCAGCCGC 149479 || || || ||||| Sbjct 13732 GACCTTCGCGGCCGC 13718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1101929954008550