Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_010116.1 Length=58663 Score E Sequences producing significant alignments: (Bits) Value seq38237 84.2 8e-12 >seq38237 Length=22261 Score = 84.2 bits (92), Expect = 8e-12 Identities = 158/232 (68%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 4998 AGGCCGCGCTGCTCGTGGTGGATGAGTATTCCATGATTGACGAACAGATGGGGGAGGACT 5057 ||||| |||| |||| | || || | ||| ||| | |||| | |||| ||| Sbjct 15891 AGGCCAAGCTGATCGTCATCGACGAATGTTCGATGGTGGACGCGGAATTGGGCCGTGACC 15950 Query 5058 TGCTCAGCTTCGGTTGCCCGATCCTCGCCCTGGGCGATCCGGGGCAGCTCCCGCC---CG 5114 || | |||| ||||||| | || | ||||||||||||| |||| | ||||| | Sbjct 15951 TGATGTCGTTCGATTGCCCGCTGCTGGTGCTGGGCGATCCGGCGCAGTTGCCGCCGATCC 16010 Query 5115 TGGGCGGCACCCCCTTCTTCAAGAACAAGCCCGACATCCTGCTCACGGAGATTCACCGCC 5174 ||||||| | ||| | | | | || ||| ||||||| ||| ||||||| | Sbjct 16011 AGGGCGGCGGCTTTTTCACCGATGCCGAACCGGACGCGATGCTCACCGAGGTTCACCGTC 16070 Query 5175 AGGCCCAGGACAACCCGATCATCTGGATGTCCAAGGAGGTCCGCGAGGGCCG 5226 |||| |||||| | |||||| | | ||||| | || ||| ||||| ||||| Sbjct 16071 AGGCGCAGGACGATCCGATCGTGCGAATGTCGATGGCGGTGCGCGAAGGCCG 16122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187450221684250