Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_010355.1 Length=62337 Score E Sequences producing significant alignments: (Bits) Value seq48231 104 9e-18 seq41976 93.3 2e-14 >seq48231 Length=140065 Score = 104 bits (114), Expect = 9e-18 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 22429 GGACATGCCGGCGGTTGGCGCGGGCGCCCTGCCCATCGCCTTCGGCAACTTCCGCGCCGG 22488 ||||||||||| | | |||| | ||| | ||||| |||||| | |||||| ||| Sbjct 138741 GGACATGCCGGACATCGCCGCGAATTCGCTGTCGATCGCGTTCGGCGATTTCCGCCGCGG 138682 Query 22489 CTACACCGTCGTGGATCGCCTGGGCATCACCGTCCTGCGCGACCCCTACTCGGCCAAGCC 22548 |||| |||||||||| || || | ||| ||||| || || || || || || || Sbjct 138681 CTACCTGATCGTGGATCGTCTCGGGGTGCGCGTGCTGCGTGATCCGTATTCCGCAAAACC 138622 Query 22549 CTTCGTGGAGTTCTACAGCCGGAAGCGCGTCGGCGGCGACGTGGTGAACTTCGAAGCCTT 22608 || |||| ||||||| | |||||||||||||||| ||| | ||||||| || | Sbjct 138621 CTACGTGCTATTCTACACCACCAAGCGCGTCGGCGGCGGCGTTCAGGACTTCGACGCGAT 138562 Query 22609 CAAGCTGATG 22618 ||||||| || Sbjct 138561 CAAGCTGGTG 138552 >seq41976 Length=13014 Score = 93.3 bits (102), Expect = 2e-14 Identities = 143/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 6467 CCTTCGTCGAAAGAATAGAACGACTTGAGGAGGAAAAGAG--CGGTCTCCAGGAGGACAT 6524 || || |||| | || || || || ||||| || |||| || || | || ||||| Sbjct 2254 CCATCATCGAGCGTATCGAGCGCCTCGAGGAAGAGAAGAAGACGATCAGC--GACGACAT 2311 Query 6525 CAAGGAAGTCTACTCGGAAGCCAAGGGCACCGGGTTCGACGTCAAGATCATTCGGCAGAT 6584 |||||| ||||| ||||||||||||| ||| |||||||||||| | | || || Sbjct 2312 CAAGGACGTCTATGGCGAAGCCAAGGGCAACGGCTTCGACGTCAAGGTGCTGCGCACCAT 2371 Query 6585 CATCCGCTTGCGGAAGATGGACAAGGCCGACCGGCAGGAACAGCGCGCCATCCTCGAAAT 6644 |||||| |||| ||| |||| | ||| || ||||| ||| ||||||| |||| Sbjct 2372 CATCCGTATGCGCAAGCAGGACGCCGACGAGCGCCAGGAGCAGGAAACCATCCTGGAAAC 2431 Query 6645 GTACGAGGAAGCGCTCGGGATG 6666 ||| | | |||||||| ||| Sbjct 2432 CTACATGCAGGCGCTCGGCATG 2453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 199190249224074