Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_011269.1 Length=154017 Score E Sequences producing significant alignments: (Bits) Value seq38569 91.5 1e-13 >seq38569 Length=123680 Score = 91.5 bits (100), Expect = 1e-13 Identities = 125/170 (74%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 112969 CCAAG-CCCAAGCCCTGCCTGTGCGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTC 113027 ||||| |||| | | | || || ||| |||||||| || || | || |||||||||||| Sbjct 60808 CCAAGGCCCAGGGCATTCCGGT-CGGGCCGGGCCGCGGTTCGGGCGCGGGCTCGCTGGTC 60750 Query 113028 ACCTACGTCATGGGCATCACCTCGATCGACCCGATCAAGTACGACCTGATGTTCGAGCGC 113087 |||| | || ||| ||| |||| |||||| || || |||| ||||||||||| Sbjct 60749 GCCTATGCGCTGACCATTACCGACCTCGATCCGATCCGGTTCGGCCTGCTGTTCGAGCGC 60690 Query 113088 TTCATCAACCCGGACCGC--CCCGACTTCCCCGACATCGACGTCGACTTC 113135 ||| |||| ||||| ||| ||| | || ||| ||||| |||||||| Sbjct 60689 TTCCTCAATCCGGAACGCGTGTCGA--TGCCGGACTTCGACATCGACTTC 60642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 492312306574360