Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq38278 102 3e-17 >seq38278 Length=22228 Score = 102 bits (112), Expect = 3e-17 Identities = 194/283 (69%), Gaps = 6/283 (2%) Strand=Plus/Plus Query 25993 TAGCGCTCAACGCCGTCCTTTTCC---CACTTGCGGGTTTTCAGTTGCCCCTCAATGTAA 26049 ||||| || ||| ||||| ||| || |||||||||| || || ||||| | ||| Sbjct 20722 TAGCGGTCCTTGCCATCCTTGTCCTGCCATTTGCGGGTTTGCAACTGGCCCTCCAGGTAG 20781 Query 26050 ACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCT--CCGCTACCTT-GCCAAACAGC 26106 |||| || || ||||| || |||| | ||||||| | | ||||| || || | | Sbjct 20782 ACCTTGGATCCCTTCTTTAGATACTGCTCGGCGATCTTGCAGAGACCTTCGCTGAAGATC 20841 Query 26107 ACGACGCGATGCCATTCTGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTT 26166 |||||||||||||| || ||| ||||||| ||||||| | ||| ||| |||| | Sbjct 20842 ACGACGCGATGCCACTCCGTCTTTTCTTTCCGCTCGCCGGAATTCTTGTCGCGCCAGGTC 20901 Query 26167 TCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCT 26226 || || || || ||| | | ||| |||| | || |||| || | ||| || Sbjct 20902 TCCGACGTTGCGACGCTTAGGTTCGCGATCGGGCGACCATCCTGCGTCCGCTTGATTTCA 20961 Query 26227 GGATCGTTCCCCAGGTTACCGACAAGGATTACTTTATTTACGC 26269 || ||| || || || || || || || |||||||| |||| Sbjct 20962 GGGTCGGCGCCGAGATTTCCAACCAGAATGACTTTATTGACGC 21004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159690002926678