Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq64782 107 2e-18 seq41198 93.3 3e-14 >seq64782 Length=5112 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || |||||||| || || || || ||||| ||||| | || | | | || || | ||| Sbjct 2766 TGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 2707 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | ||||| ||||||||||| ||||| || || || || || || Sbjct 2706 TTGCCAGCAAAGATGAGGCGCTGCTGATCGGGCGGGATGCCCTCCTTGTCCTGGATCTTC 2647 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || || | || | ||||| || | || ||||| || |||| || |||||||| Sbjct 2646 TGCTTCACGTTCTCGATGGTGTCGGAGCTCTCGACTTCGAGGGTGATGGTCTTGCCGGTC 2587 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || || || ||||||||| Sbjct 2586 AGGGTCTTCACGAAGATCTGCATG 2563 >seq41198 Length=3949 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || ||||| || || | || | | | || || | ||| Sbjct 1691 TGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCCAGGGTACGGCCGTCCTCGAGCTGC 1632 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | ||||| ||||||||||| ||||| || || || ||||| || Sbjct 1631 TTGCCGGCGAAGATGAGGCGCTGCTGATCGGGCGGGATGCCCTCCTTGTCCTGAATCTTC 1572 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || || | || | ||||| || | || || || || |||| || ||||| || Sbjct 1571 TGCTTCACGTTCTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCAGTC 1512 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || || || ||||||||| Sbjct 1511 AGCGTCTTGACGAAGATCTGCATG 1488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395953688612181