Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_018843.1 Length=103299 Score E Sequences producing significant alignments: (Bits) Value seq40467 107 1e-18 >seq40467 Length=83434 Score = 107 bits (118), Expect = 1e-18 Identities = 190/270 (70%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 79552 ACCAACAATCGGATGGAGATGATGGGCGCCCTGATTGCGCTGGAGCGTCTGAAGTACCC- 79610 |||||||| || ||||| |||||| || | ||||| ||| |||||| | || Sbjct 35498 ACCAACAACCGCATGGAATTGATGGCGGCGATCTCGGCGCTCGAGGCCCTGAAGAAGCCG 35439 Query 79611 -CTGCAACGT-GATCCTGCATTCCGACAGCCAGTATCTAAAAAACGGCATGACGCTCTGG 79668 || | ||| |||| || |||||||||||||| | | ||||| || |||| Sbjct 35438 GCTTC--CGTCGATC-TGACCACCGACAGCCAGTATGTCCGTCAGGGCATCACCAGCTGG 35382 Query 79669 ATGAAAGGCTGGAAGCGTAACGGATGGATCACGTCTGAGAAGAAGCCAGTCAAAAACGTC 79728 || | ||||||||| ||||| ||| |||| | || |||||||| ||||| || | | Sbjct 35381 ATTCACAACTGGAAGCGCAACGGCTGGCGCACGGCCGACAAGAAGCCTGTCAAGAATGCC 35322 Query 79729 GATCTCTGGAAACGTCTTGATGCGGC-CGCCAGCCGTCACAATGTCCGCTGGAAGTGGGT 79787 ||||| ||| | || || ||||| || | || | ||||| || |||||| | ||| | Sbjct 35321 GATCTGTGGCAGCGGCTCGATGCCGCGCTGAAGGC-TCACACGGTTCGCTGGCACTGGAT 35263 Query 79788 TAAAGGTCATGCCGGTCATCGCGAGAACGA 79817 || || ||||||||||| ||||||||| Sbjct 35262 CAAGGGCCATGCCGGTCACGCCGAGAACGA 35233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330161243296380