Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq34564 102 1e-16 seq35273 84.2 4e-11 >seq34564 Length=203146 Score = 102 bits (112), Expect = 1e-16 Identities = 229/336 (68%), Gaps = 6/336 (2%) Strand=Plus/Plus Query 110997 CGCGAAGACGGCCTGGGCAATGCGGTCGCCGCGATTGATGACGAACGGATTGCGGCCGTG 111056 ||||| ||| |||||| ||||| || ||||| ||| ||| || | | ||| || Sbjct 13236 CGCGATGACAAGCTGGGCGATGCGCTCCCCGCGCCGGATCGTGAATGGCTCGTCGCCATG 13295 Query 111057 GTTGATCAGGATCACCTTGATCTCGCCGCGATAGTCGCTGTCGACGGTACCGGGCGAATT 111116 ||||||| | ||| | ||||||||||||||| ||||||||| || |||||||| Sbjct 13296 ATTGATCAAAAGCACTGAAACTTCGCCGCGATAGTCGGCGTCGACGGTTCCCGGCGAATT 13355 Query 111117 CAGGACAGTGATAGACG-ACTTGGCGGCGAGGCCCGAGCGCGGCCGGACTTGCAGTTCCA 111175 || || || | | || |||| ||||| || ||||||||||| || ||| || Sbjct 13356 GAGAACGGTCA-CGCCGTGCTTGAATGCGAGACCTGAGCGCGGCCGCACCTGCGCCTCTT 13414 Query 111176 GGCCCGCCGGCAGGGCGACCGTGACGCCGGTCGGGATGATGCCGACTTCGCCC-GCAGCG 111234 |||| | ||||| |||| | | | ||||| || | | || || ||| || || Sbjct 13415 GGCCTGGCGGCACCGCGATCATCAGCCCGGTTGGCACCAGCGCGCGTTGTCCCGGCTGC- 13473 Query 111235 ATAGTAAAGGGTTCATCCTCGGGGATCGCGGCACGCAAGTCCAGGCCGGCGG-ACCCACG 111293 || || | || || ||||| | ||| || | | || ||||| |||| | | | Sbjct 13474 ATCGTCAGCGGCCTGTCTTCGGGAACCGCCGCCAGGAGATCGAGGCCCGCGGCATGCGC- 13532 Query 111294 GGTCTCGTAGGCTGGCAGCGGCAGGCCTTGGGCATG 111329 ||||| ||||| ||||||| |||||||| ||| || Sbjct 13533 GGTCTGATAGGCCGGCAGCGCCAGGCCTTCGGCGTG 13568 Score = 89.7 bits (98), Expect = 9e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 191910 ATCCGGTCGACATCCATGTGGGCAAGCGCATCCGCATGCGTCGCAAGACTCTCGGCGTCA 191969 |||| || |||| |||| |||| ||| | |||||||| || | | || ||| | | Sbjct 44175 ATCCCGTTGACAAGTATGTCGGCAGCCGCGTGCGCATGCGCCGGATCATGCTTGGCATGA 44116 Query 191970 GCCAGGAACAACTCGCCAGCGCGCTGGGTCTGACCTTCCAGCAGGTGCAGAAGTACGAGA 192029 | |||||| |||| | | ||||| || || || || |||||||| ||||| ||||||| Sbjct 44115 GTCAGGAAAAACTTGGCGAGGCGCTTGGCCTCACATTTCAGCAGGTCCAGAAATACGAGA 44056 Query 192030 AGGGCGGCAATCGCGTCAGCGCGAGCAAGCTGCA 192063 ||||| ||| ||| || |||| ||| ||||| Sbjct 44055 AGGGCACCAACCGCATCGGCGCAAGCCGCCTGCA 44022 >seq35273 Length=48725 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| |||||| ||||||||| Sbjct 41941 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCATAGGTTCAAAT 41882 Query 133023 CCCTCCCCCGCATCCA 133038 || ||||||| ||| Sbjct 41881 CCTATCCCCGCAACCA 41866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895013586720360