Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_019410.1 Length=221828 Score E Sequences producing significant alignments: (Bits) Value seq38361 91.5 2e-13 >seq38361 Length=167166 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 149196 TCGACCGCCTTCTGGGCCAGCGACGCGGCGGTGAAGATGAAGCGCTTGTCGCCCTTCAGG 149255 ||||||||||| ||||||| | || || || ||||| |||||| || || || Sbjct 2651 TCGACCGCCTTTTGGGCCAATGCAGCTGCAGTAAAGATCGCGCGCTTATCTGATTTGAGC 2710 Query 149256 ACCTTCAGCCAGGAGGCGACATAGGAGGCGTGGTCT--TCGCGGACTTCCGGGGTCAGGC 149313 || ||||||| | | | |||| ||||||||| |||||| || | || | | Sbjct 2711 ACAGCCAGCCAGTTGCCAAGGTAGGCGGCGTGGTCGGGTCGCGGC--TCGAGCGTGATGG 2768 Query 149314 CGAGGATGGCGCAGAGGAAGGCCGAGCCCAGTTCGGCGACCAGTTCCTCGGCGGCGTAGG 149373 ||| ||| |||||||| || | || | ||| || |||||||||||| || |||| Sbjct 2769 AGAGATCGGCACAGAGGAACGCGGCACCGATTTCTGCAACCAGTTCCTCGCGCGCATAGG 2828 Query 149374 CCTCGTCACCGAAGCGCTTGCCGAACTCGCGGT 149406 | | ||| || ||||||||||| | ||||||| Sbjct 2829 CGTGGTCGCCAAAGCGCTTGCCAAGATCGCGGT 2861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709125141095840