Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_019519.1 Length=69391 Score E Sequences producing significant alignments: (Bits) Value seq41976 96.9 2e-15 >seq41976 Length=13014 Score = 96.9 bits (106), Expect = 2e-15 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 11698 CATGCCGAGTGCTGCCATGTACGTTTCGAGAATTGTTTCTTCTTCAAGGCGCTCATTCGC 11757 ||||||||| || |||||| ||||| || || ||||| | || ||||||| | || Sbjct 2453 CATGCCGAGCGCCTGCATGTAGGTTTCCAGGATGGTTTCCTGCTCCTGGCGCTCGTCGGC 2394 Query 11758 ATCTTTTTTACGAATGCCGATGATTTTGCGAATCGCCTTGGTATCGTAGCCGCGACCCTT 11817 || | || || || | |||||| |||| | | ||||| ||| ||||| ||||| Sbjct 2393 GTCCTGCTTGCGCATACGGATGATGGTGCGCAGCACCTTGACGTCGAAGCCGTTGCCCTT 2334 Query 11818 GGCTTCACTCAT-GACGTCTTTGATATCG-CCCTGAATAGCTGCTTTTTCTTCTTCAAGG 11875 |||||| | ||| |||||| ||||| ||| | |||| || | || ||||| || ||| Sbjct 2333 GGCTTCGC-CATAGACGTCCTTGATGTCGTCGCTGATCGTCTTC-TTCTCTTCCTCGAGG 2276 Query 11876 CGCTCGACGCGCTCAATGA 11894 ||||||| ||||| |||| Sbjct 2275 CGCTCGATACGCTCGATGA 2257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 221744553022376