Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq34497 170 6e-38 >seq34497 Length=166879 Score = 170 bits (188), Expect = 6e-38 Identities = 360/533 (68%), Gaps = 8/533 (2%) Strand=Plus/Plus Query 45477 ACGGCGTGGAGAAAGAA-GATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAG 45535 |||||| ||| ||||| || || || || || || || |||| |||||||||| |||| Sbjct 39834 ACGGCGCGGA-AAAGACCGACCGCACCGGGACCGGAACGCTGTCCGTGTTCGGCCATCAG 39892 Query 45536 CTGCGCTTTAACTTGCAGGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGC 45595 |||| ||||| || | || |||||| | |||| || || ||| | ||| | Sbjct 39893 ATGCGGTTTAATCTGGCGTCGGGTTTCCCGATGCTGACCACCAAGAAGCTTCATCTGAAA 39952 Query 45596 TCGATCATTTATGAACTGCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAG 45655 |||||| | |||||||||| |||||| | ||||| || ||| | || ||| | Sbjct 39953 TCGATCGTCCATGAACTGCTGTGGTTTCTGGCGGGCGACACCAATATCAAGTACTTGAAC 40012 Query 45656 GAGAATGGTGTGACGATTTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATC 45715 || || || || || ||||| |||||||| || ||||||||| |||||||||| | Sbjct 40013 GACAACGGCGTCCGCATCTGGGATGAGTGGGCGGACGAAAACGGCAATCTCGGCCCCGTT 40072 Query 45716 TACGGCGCGCAATGGCGGTCGTGGAAAGGGGCTGACGGGAAAACGGTCGACCAAATTGCG 45775 ||||| |||| ||||| || ||| | ||||| || |||| || ||| | Sbjct 40073 TACGGATCGCAGTGGCGCTCATGGCCCGCTCAGGACGGCGGCACAATCGATCAGATTTCC 40132 Query 45776 GCGGTCTTTAAGGAAATCAAGCGCAAC---CCGAACTCGCGGCGGTTGCTTGTGAGCGCG 45832 | | | || || | ||||| ||| ||||||| || || |||||||||| Sbjct 40133 AA---CCTGATCGAGATGATCCGCAAAAATCCGGACTCGCGACGCCTGATTGTGAGCGCC 40189 Query 45833 TGGAACGTGGCAAAGTTGGGGGAAATGAAGTTGCCCCCATGTCATTACGCCTTTCAGTTT 45892 ||||| ||| | | | | ||| | |||| || || |||| | ||||||||| Sbjct 40190 TGGAATCCGGCCGAAGTCGACAAGATGGCGCTGCCGCCCTGCCATTGCTTGTTTCAGTTT 40249 Query 45893 TACGTCGCGAATGGCCGGTTGTCATGCATGTGGCAACAGCGTTCTGTCGATACATTTCTA 45952 || ||||| || ||| | |||| ||| | | |||||||| | ||| || || Sbjct 40250 TATGTCGCCAAGGGCAAGCTGTCCTGCCAGCTCTACCAGCGTTCAGCGGATGTCTTCCTC 40309 Query 45953 GGATTGCCGTTTAACATCGCTAGCTATGCGCTGTTGACACATATGGTTGCCCA 46005 || ||||||| |||||||| |||||||||| ||||| ||||| || || Sbjct 40310 GGCGTGCCGTTCAACATCGCGTCCTATGCGCTGCTGACAATGATGGTGGCGCA 40362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157624453362362