Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq34497 152 8e-32 seq38569 91.5 2e-13 >seq34497 Length=166879 Score = 152 bits (168), Expect = 8e-32 Identities = 187/254 (74%), Gaps = 1/254 (0%) Strand=Plus/Plus Query 122406 GGCACGAAAAAG-CAGACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATG 122464 ||| || ||||| | ||||| || || || || || ||||| | |||||| || ||| Sbjct 39836 GGCGCGGAAAAGACCGACCGCACCGGGACCGGAACGCTGTCCGTGTTCGGCCATCAGATG 39895 Query 122465 CGCTTTGACCTGCAAAAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCC 122524 || ||| | ||| ||||||||| || | || ||||| ||| |||| || || Sbjct 39896 CGGTTTAATCTGGCGTCGGGTTTCCCGATGCTGACCACCAAGAAGCTTCATCTGAAATCG 39955 Query 122525 ATCATCCATGAGCTTCTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGAC 122584 ||| ||||||| || |||||||| || |||||| ||||| ||| |||| |||| ||| Sbjct 39956 ATCGTCCATGAACTGCTGTGGTTTCTGGCGGGCGACACCAATATCAAGTACTTGAACGAC 40015 Query 122585 AACAACGTCAGTATCTGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTAC 122644 ||| |||| | ||||||||||| ||||| || ||| | || ||||||||||| || ||| Sbjct 40016 AACGGCGTCCGCATCTGGGATGAGTGGGCGGACGAAAACGGCAATCTCGGCCCCGTTTAC 40075 Query 122645 GGTAAGCAATGGCG 122658 || ||| ||||| Sbjct 40076 GGATCGCAGTGGCG 40089 >seq38569 Length=123680 Score = 91.5 bits (100), Expect = 2e-13 Identities = 58/62 (94%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 169733 GTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCCG 169792 |||||||||||||| ||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct 94384 GTAGCTCAGTTGGT-TAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 94326 Query 169793 TC 169794 || Sbjct 94325 TC 94324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 776978468346800