Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq61869 95.1 8e-14 seq61372 95.1 8e-14 seq61371 95.1 8e-14 seq52451 95.1 8e-14 seq52450 95.1 8e-14 seq48515 93.3 3e-13 >seq61869 Length=2361 Score = 95.1 bits (104), Expect = 8e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 |||||||| || || || || || || ||||| ||| | ||||| || ||||| || || Sbjct 1221 AAGATGGCCTACCAGGCCTCCAAGGGCATGCACTTCCTTCACTCGTCGGGCATCGTGCAC 1280 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTGAGTGAT 878245 | ||||||||||| || || || || || || || || ||||| || || ||||| || Sbjct 1281 CGCGATCTCAAGTCGCTCAACCTGCTGCTCGACTCCAAGTGGAACGTCAAGGTGAGCGAC 1340 Query 878246 TTTGGTTTGACAAAGTT 878262 |||||| | || ||||| Sbjct 1341 TTTGGTCTCACCAAGTT 1357 >seq61372 Length=6290 Score = 95.1 bits (104), Expect = 8e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 ||| | || || ||||| || ||||||||||||||||| || || || ||||| || ||| Sbjct 5462 AAGGTCGCCTACCAAGCCTCCAAAGGAATGCATTTCTTGCATTCCTCTGGCATCGTGCAT 5521 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTGAGT 878242 | ||||||||||| || || || || || || || || |||||||| || ||| || Sbjct 5522 CGCGATCTCAAGTCCCTCAACCTGCTGCTCGACTCCAAGTGGAATGTCAAGGTGCGT 5578 >seq61371 Length=6309 Score = 95.1 bits (104), Expect = 8e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 ||| | || || ||||| || ||||||||||||||||| || || || ||||| || ||| Sbjct 5481 AAGGTCGCCTACCAAGCCTCCAAAGGAATGCATTTCTTGCATTCCTCTGGCATCGTGCAT 5540 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTGAGT 878242 | ||||||||||| || || || || || || || || |||||||| || ||| || Sbjct 5541 CGCGATCTCAAGTCCCTCAACCTGCTGCTCGACTCCAAGTGGAATGTCAAGGTGCGT 5597 >seq52451 Length=6202 Score = 95.1 bits (104), Expect = 8e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 ||| | || || ||||| || ||||||||||||||||| || || || ||||| || ||| Sbjct 3528 AAGGTCGCCTACCAAGCCTCCAAAGGAATGCATTTCTTGCATTCCTCTGGCATCGTGCAT 3587 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTGAGT 878242 | ||||||||||| || || || || || || || || |||||||| || ||| || Sbjct 3588 CGCGATCTCAAGTCCCTCAACCTGCTGCTCGACTCCAAGTGGAATGTCAAGGTGCGT 3644 >seq52450 Length=6202 Score = 95.1 bits (104), Expect = 8e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 ||| | || || ||||| || ||||||||||||||||| || || || ||||| || ||| Sbjct 3528 AAGGTCGCCTACCAAGCCTCCAAAGGAATGCATTTCTTGCATTCCTCTGGCATCGTGCAT 3587 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTGAGT 878242 | ||||||||||| || || || || || || || || |||||||| || ||| || Sbjct 3588 CGCGATCTCAAGTCCCTCAACCTGCTGCTCGACTCCAAGTGGAATGTCAAGGTGCGT 3644 >seq48515 Length=7621 Score = 93.3 bits (102), Expect = 3e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 878087 AATGAACTTATTCCAGATATTCCTCTAGAACTTAAAATTAAGATGGCATATCAAGCATCT 878146 || ||||| || || || ||||| | | || || |||||||| || || || || Sbjct 6330 AACGAACTGATCCCGGACATTCCGTTCGCGCTCAAGGCCAAGATGGCCTACCAGGCCTCC 6389 Query 878147 AAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCATAGAGATCTCAAGTCTCTTAAT 878206 || || ||||| ||| | ||||| || ||||| || || | ||||||||||| || || Sbjct 6390 AAGGGCATGCACTTCCTCCACTCGTCGGGCATCGTGCACCGCGATCTCAAGTCGCTCAAC 6449 Query 878207 CTACTACTAGATTCTAAATGGAATGTTAAAGTGAGTGATTTTGGTTTGACAAAGTT 878262 || || || || | || ||||| || || ||||| || |||||| | || ||||| Sbjct 6450 CTGCTGCTGGACGCCAAGTGGAACGTCAAGGTGAGCGACTTTGGTCTCACCAAGTT 6505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265295250415484