Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq64713 113 5e-20 >seq64713 Length=190342 Score = 113 bits (124), Expect = 5e-20 Identities = 176/252 (70%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 138161 AAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATG 138220 ||| || | ||| ||||| || || || || || | ||| ||||| || || || || Sbjct 162083 AAACGGCGCGAGGTGTTTCTTCACGCCGATCGGGCCCATGCCGGGACCGCCGCCGCCGTG 162024 Query 138221 TGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGG 138280 |||||| ||||| ||||| || | || ||||| | ||||| || || ||||| | || Sbjct 162023 TGGAATGCAGAAGGTCTTGTGCAGGTTGAGATGGCTGACATCCGCGCCGTAGTCGCCGGG 161964 Query 138281 TTTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATT 138340 || || || ||||| || || ||||| || ||||||||||| ||||| || || | Sbjct 161963 CCGCGCGAGCCCGACCTGCGCGTTGAGATTGGCGCCATCGAGATAGACCTGTCCGCCGTG 161904 Query 138341 GTCATGAACGATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGG 138400 | || ||||| | || |||| | ||||| || || || || || ||||| || Sbjct 161903 GCTGTGGACGATGTCGCAGATCTCGCGGATGTGCTCCTCGAACACGCCGTGGGTCGAGGG 161844 Query 138401 ATATGTAATCAT 138412 ||| || ||||| Sbjct 161843 ATAGGTGATCAT 161832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578511802507160