Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq58101 105 8e-18 seq49189 105 8e-18 seq38874 105 8e-18 seq65323 104 3e-17 seq57661 87.8 2e-12 seq42187 87.8 2e-12 seq37095 87.8 2e-12 seq47653 82.4 9e-11 >seq58101 Length=8023 Score = 105 bits (116), Expect = 8e-18 Identities = 172/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| || || ||||| | ||| ||| |||| | || Sbjct 6174 CCCCAGCACATGCTCATGCGCGTGGCCGTCGGCCTGCACAAGGACAACATCCCCGCCGTG 6115 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 | ||||| |||||| |||| || | |||| ||||| || || || |||||| Sbjct 6114 ATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCCACCCCGACGCTCTTC 6055 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 || || || || || | |||||| |||| ||||||||| || ||| ||||||||| Sbjct 6054 AACGCCGGAACCCCGCGCCCGCAGCTGTCGTCTTGCTTCCTGCTCACCATGAAGGAGGAC 5995 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 || ||| | || ||||| | || || | | ||||||| | ||||| |||| ||| || Sbjct 5994 TCGATCGAGGGCATCTACGATACCCTCAAGCAGTGTGCCCTCATCTCCAAGTCGGCCGGC 5935 Query 75452 GGTATTGG 75459 || || || Sbjct 5934 GGCATCGG 5927 >seq49189 Length=7476 Score = 105 bits (116), Expect = 8e-18 Identities = 172/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| || || ||||| | ||| ||| |||| | || Sbjct 6852 CCCCAGCACATGCTCATGCGCGTGGCCGTCGGCCTGCACAAGGACAACATCCCCGCCGTG 6793 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 | ||||| |||||| |||| || | |||| ||||| || || || |||||| Sbjct 6792 ATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCCACCCCGACGCTCTTC 6733 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 || || || || || | |||||| |||| ||||||||| || ||| ||||||||| Sbjct 6732 AACGCCGGAACCCCGCGCCCGCAGCTGTCGTCTTGCTTCCTGCTCACCATGAAGGAGGAC 6673 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 || ||| | || ||||| | || || | | ||||||| | ||||| |||| ||| || Sbjct 6672 TCGATCGAGGGCATCTACGATACCCTCAAGCAGTGTGCCCTCATCTCCAAGTCGGCCGGC 6613 Query 75452 GGTATTGG 75459 || || || Sbjct 6612 GGCATCGG 6605 >seq38874 Length=7777 Score = 105 bits (116), Expect = 8e-18 Identities = 172/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| || || ||||| | ||| ||| |||| | || Sbjct 1604 CCCCAGCACATGCTCATGCGCGTGGCCGTCGGCCTGCACAAGGACAACATCCCCGCCGTG 1663 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 | ||||| |||||| |||| || | |||| ||||| || || || |||||| Sbjct 1664 ATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCCACCCCGACGCTCTTC 1723 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 || || || || || | |||||| |||| ||||||||| || ||| ||||||||| Sbjct 1724 AACGCCGGAACCCCGCGCCCGCAGCTGTCGTCTTGCTTCCTGCTCACCATGAAGGAGGAC 1783 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 || ||| | || ||||| | || || | | ||||||| | ||||| |||| ||| || Sbjct 1784 TCGATCGAGGGCATCTACGATACCCTCAAGCAGTGTGCCCTCATCTCCAAGTCGGCCGGC 1843 Query 75452 GGTATTGG 75459 || || || Sbjct 1844 GGCATCGG 1851 >seq65323 Length=85180 Score = 104 bits (114), Expect = 3e-17 Identities = 170/243 (70%), Gaps = 3/243 (1%) Strand=Plus/Minus Query 64990 TTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGG 65049 ||| | |||||| | || || || | | |||||||||| | ||||| ||| ||| Sbjct 60766 TTTAACGCCATCGAGACGGTGCCCTCGGTGAAGAAGAAGGCCGAGTGGGCCATGCGGTGG 60707 Query 65050 TTTGACACAAAG--TCTCG-CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAG 65106 | ||| || ||||| | |||| ||||||||||| | | || || || ||| Sbjct 60706 ATCAACAAGGAGGGTCTCGACACCTTTGCCGAGCGCCTCGTCGGATTCGCCGCCGTCGAG 60647 Query 65107 GGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATG 65166 || ||||||||||| || || ||||| | || | ||| | ||||| || ||||||||| Sbjct 60646 GGCATCTTCTTCTCGGGCTCCTTCTGTTCCATCTTCTGGCTCAAGAAACGCGGTCTCATG 60587 Query 65167 CCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTT 65226 || ||||| |||||| || || || || ||| || ||||| || ||| |||||| Sbjct 60586 CCCGGCCTCGCCTTCTCCAACGAGCTCATCAGCCGCGACGAGGGCCTGCACGCAGAGTTT 60527 Query 65227 GCC 65229 ||| Sbjct 60526 GCC 60524 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 75587 CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTT 75646 || ||||| || ||||| ||||| |||| || |||||| | || ||| | |||||||| Sbjct 56252 CGAAAGGGAGCCTTCGCGATCTACCTGGAGCCCTGGCATTCGGACATCTTCGAGTTCCTC 56311 Query 75647 GAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTG 75706 || | | ||||| || | || ||| || | | || ||||| | |||| Sbjct 56312 GATCTCAAAAAGAACCACGGCAAGGAGGAGAACCGCGCTCGCGACCTCTTCTACGGCCTG 56371 Query 75707 TGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGT 75766 |||||||| || || ||||||||||| || |||| ||||| | ||||| || ||| | Sbjct 56372 TGGATTCCCGATCTCTTCATGAAGCGCGTCGAGGCTGGTGGCTACTGGTCGCTGTTCGAT 56431 Query 75767 CCAGACAAGGCACCAGGTCT 75786 || || | || || ||||| Sbjct 56432 CCCAACGAAGCGCCGGGTCT 56451 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 75311 CACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTC 75370 ||||| || || ||||||||||| ||||| || || || |||||| |||||||||| Sbjct 55890 CACGCCACCCCGACCCTCTTCAACGCTGGCACGCCGGTCCCCCAGATGAGCAGTTGCTTC 55949 Query 75371 CTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCG 75430 || | | || ||||||||||| ||| || | ||||| | || || | | ||| ||| Sbjct 55950 CTCTTGGACATGAAGGAGGACTCCATCGACAGCATCTACGAGACCCTCAAGCGGTGCGCG 56009 Query 75431 CAAATCTCAAAGTGGGCTGGGGGTATTGG 75459 | ||||| ||| | || || || || || Sbjct 56010 CTCATCTCCAAGAGCGCGGGAGGCATCGG 56038 >seq57661 Length=1717 Score = 87.8 bits (96), Expect = 2e-12 Identities = 231/343 (67%), Gaps = 10/343 (3%) Strand=Plus/Minus Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 |||||||||||||||| | | || || || ||||| |||||||||||||| | Sbjct 1298 CCTTCGCCGAGCGCCTCATCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCT 1239 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 ||||| | || | |||| | |||||||| || || ||||| ||||| |||| || | Sbjct 1238 TCTGCTCCATCTTTTGGCTCAAGAAGCGCGGCCTGATGCCCGGCCTCGCCTTCAGTAACG 1179 Query 65189 AACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTT 65248 | | || ||| || ||||| |||||| || |||||| || ||| || | || Sbjct 1178 AGATGATCAGCCGCGACGAGGGCCTCCACTGCGACTTTGCC-TG--CCTCCTCTACACCA 1122 Query 65249 TG--CGT-AATAGACCCACTACCGAAACTATCCACGC-CATCGTGAAAGAGGCGGTTGAG 65304 || ||| || | ||| | |||| | | ||| || ||| | ||||| || ||| Sbjct 1121 TGCTCGTCAACAAGCCCTCGACCG-ACGTGCCCAAGCAGATCATCCTCGAGGCCGTCGAG 1063 Query 65305 ATTGAGAAAGGGTTCATCTTGGACGCACT-CCCATGTAATCTCATCGGTATGAACTCTGA 65363 |||||||| | ||| | || | || ||| || |||||||| |||||| | || Sbjct 1062 ATTGAGAAGGAATTCGTGACCGAGTCGCTGCCCGTG-GCCCTCATCGGCATGAACGCCGA 1004 Query 65364 GAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTC 65406 |||| | ||||||| |||| || | || || |||||| Sbjct 1003 CCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTC 961 >seq42187 Length=1775 Score = 87.8 bits (96), Expect = 2e-12 Identities = 231/343 (67%), Gaps = 10/343 (3%) Strand=Plus/Plus Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 |||||||||||||||| | | || || || ||||| |||||||||||||| | Sbjct 420 CCTTCGCCGAGCGCCTCATCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCT 479 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 ||||| | || | |||| | |||||||| || || ||||| ||||| |||| || | Sbjct 480 TCTGCTCCATCTTTTGGCTCAAGAAGCGCGGCCTGATGCCCGGCCTCGCCTTCAGTAACG 539 Query 65189 AACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTT 65248 | | || ||| || ||||| |||||| || |||||| || ||| || | || Sbjct 540 AGATGATCAGCCGCGACGAGGGCCTCCACTGCGACTTTGCC-TG--CCTCCTCTACACCA 596 Query 65249 TG--CGT-AATAGACCCACTACCGAAACTATCCACGC-CATCGTGAAAGAGGCGGTTGAG 65304 || ||| || | ||| | |||| | | ||| || ||| | ||||| || ||| Sbjct 597 TGCTCGTCAACAAGCCCTCGACCG-ACGTGCCCAAGCAGATCATCCTCGAGGCCGTCGAG 655 Query 65305 ATTGAGAAAGGGTTCATCTTGGACGCACT-CCCATGTAATCTCATCGGTATGAACTCTGA 65363 |||||||| | ||| | || | || ||| || |||||||| |||||| | || Sbjct 656 ATTGAGAAGGAATTCGTGACCGAGTCGCTGCCCGTG-GCCCTCATCGGCATGAACGCCGA 714 Query 65364 GAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTC 65406 |||| | ||||||| |||| || | || || |||||| Sbjct 715 CCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTC 757 >seq37095 Length=1954 Score = 87.8 bits (96), Expect = 2e-12 Identities = 231/343 (67%), Gaps = 10/343 (3%) Strand=Plus/Plus Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 |||||||||||||||| | | || || || ||||| |||||||||||||| | Sbjct 1525 CCTTCGCCGAGCGCCTCATCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCT 1584 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 ||||| | || | |||| | |||||||| || || ||||| ||||| |||| || | Sbjct 1585 TCTGCTCCATCTTTTGGCTCAAGAAGCGCGGCCTGATGCCCGGCCTCGCCTTCAGTAACG 1644 Query 65189 AACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTT 65248 | | || ||| || ||||| |||||| || |||||| || ||| || | || Sbjct 1645 AGATGATCAGCCGCGACGAGGGCCTCCACTGCGACTTTGCC-TG--CCTCCTCTACACCA 1701 Query 65249 TG--CGT-AATAGACCCACTACCGAAACTATCCACGC-CATCGTGAAAGAGGCGGTTGAG 65304 || ||| || | ||| | |||| | | ||| || ||| | ||||| || ||| Sbjct 1702 TGCTCGTCAACAAGCCCTCGACCG-ACGTGCCCAAGCAGATCATCCTCGAGGCCGTCGAG 1760 Query 65305 ATTGAGAAAGGGTTCATCTTGGACGCACT-CCCATGTAATCTCATCGGTATGAACTCTGA 65363 |||||||| | ||| | || | || ||| || |||||||| |||||| | || Sbjct 1761 ATTGAGAAGGAATTCGTGACCGAGTCGCTGCCCGTG-GCCCTCATCGGCATGAACGCCGA 1819 Query 65364 GAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTC 65406 |||| | ||||||| |||| || | || || |||||| Sbjct 1820 CCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTC 1862 >seq47653 Length=11216 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 65101 GTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGT 65160 || ||||| ||||||||||||||||| |||||| | || | ||| | |||||||| || Sbjct 8368 GTTGAGGGCATCTTCTTCTCCGGGTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGC 8309 Query 65161 CTCATGCCAGGCCTATGCTTCTCAAATGAACTTAT 65195 |||||||| ||||| |||||| || || || || Sbjct 8308 CTCATGCCCGGCCTGGCCTTCTCCAACGAGCTCAT 8274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596068235451040