Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_020866.1 Length=40231 Score E Sequences producing significant alignments: (Bits) Value seq42473 114 3e-21 >seq42473 Length=64406 Score = 114 bits (126), Expect = 3e-21 Identities = 233/349 (67%), Gaps = 29/349 (8%) Strand=Plus/Minus Query 39904 CTGAAGCTGGAGTTTTCCGCTAAGTTTCCCTGGCTGGGAGAGGAGCGGAATCGCATGAAG 39963 ||||| ||||| ||| | || | | ||||| ||| ||||||| || ||||||| Sbjct 38690 CTGAA-CTGGAATTTCCACTTATGGTCCCCTGTTGGGGCGAGGAGC---ATTCCATGAAG 38635 Query 39964 GCATCGAAGTTCACAGAGGCGCAGAAGGCGTTCATCCTGAAGCAGGGCGAGGAAGGCACG 40023 |||||||||||||| |||||||||| || ||| | || |||||| |||| |||||| Sbjct 38634 GCATCGAAGTTCACGGAGGCGCAGATCGCCTTCGTTTTGCAGCAGGCGGAGGGCGGCACG 38575 Query 40024 CCGGTCGCAAAGATCTGCCGCAAGGCCGGGATCAGCTAGGCGGCCTACTTCAACTGGAAG 40083 ||| | || || | ||||| ||||| || ||||| | ||| | | | ||||||| | Sbjct 38574 CCGATTGCGGAGGTTTGCCGGAAGGCTGGCATCAGTGACGCGACGTTTTGCAACTGGCGG 38515 Query 40084 AAGCGATATGGCGGCTAAAG------------------------CAGCTTGAGGACGAGA 40119 ||| ||| | ||||| | | ||||| || ||||||| Sbjct 38514 AAGAAATACGCCGGCTTATGCCATCGGAGATGAAGCGCTTACGTCAGCTCGAAGACGAGA 38455 Query 40120 ATGCCCGACTGAAGAAGATCGTGGCCGACCTGACGCTCGACCGCGAGATGTTGAAGGACG 40179 ||| | ||||| ||| || || |||||| | |||||| | ||| || |||||| Sbjct 38454 ATGTCAAGCTGAAACGGATTGTCGCGGACCTGTCCCTCGACAAGGCAATGCTGCAGGACG 38395 Query 40180 TCATCCGCCGAAAACTCTGAGGCCTTTCCGGAAGCGACAGCTCGTCGAC 40228 | | | ||| || |||||||| ||| ||||| | || |||||| Sbjct 38394 TGCT-TTCAAAAAGCTTTGAGGCCTGGCCGCAAGCGCGAACTTGTCGAC 38347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128514912753178