Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq38569 143 9e-30 >seq38569 Length=123680 Score = 143 bits (158), Expect = 9e-30 Identities = 273/398 (69%), Gaps = 8/398 (2%) Strand=Plus/Plus Query 40653 GGCTTGTCCAGCACGCGGGCTGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGTCCGTAC 40712 ||| | | |||||||||| | |||| || | || |||||||| | | ||| | Sbjct 60505 GGCATCTGCAGCACGCGGCCGACGTCGCGCAGCACGCCGCGCGCCTGCAGCGTCCCGAAG 60564 Query 40713 GTCGCGATCTGCGCGACCTTGTCGGCCCCGTACT--TCCGGGTGACGTACTGGATCACCT 40770 || ||||||| |||||| ||| ||||| ||| | ||||| |||| |||| Sbjct 60565 GTGATGATCTGCCCGACCTGCTCGCGGCCGTAGCGCTCCTGC--ACGTAGCGGATGACCT 60622 Query 40771 CGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGG 40828 |||| || || || | || |||||||||||||| || ||||| |||||||| || || Sbjct 60623 CGCCGCGGCGATCCTGACA--GAAGTCGATGTCGAAGTCCGGCATCGACACGCGTTCCGG 60680 Query 40829 GTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAG 40888 || ||||| |||||||| | || ||| | | ||| ||||||||||| || || Sbjct 60681 ATTGAGGAAGCGCTCGAACAGCAGGCCGAACCGGATCGGATCGAGGTCGGTAATGGTCAG 60740 Query 40889 GACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTT 40948 | |||||||||||||| || || | || || || || || |||||| | ||| | Sbjct 60741 CGCATAGGCGACCAGCGAGCCCGCGCCCGAACCGCGGCCCGGCCCGACCGGAATGCCCTG 60800 Query 40949 CTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTG 41008 |||| ||||| ||||||||||| |||| |||||||| || || ||| | Sbjct 60801 GGCCTTGGCCCACTTGATGAAGTCCGACACGATCAGGAAGTAGCCCGAATAGTTCATGCG 60860 Query 41009 GATGATCATGTCGATCTCGTACTGGAGCTGCTTGCCGT 41046 | |||| | |||| |||| | ||| |||||| || Sbjct 60861 GGTGATGACATCGAGCTCGAAGGCGAGACGCTTGCTGT 60898 Score = 89.7 bits (98), Expect = 2e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 39824 CTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTG 39883 || |||| ||| || || | ||||||||||||| || ||||| ||||||||||| | Sbjct 59721 CTGCTTGTCCATTTCCGCGCGGATCTTCTTGCCCATTGCGCGGCGCAGCAGGTCGGCGTC 59780 Query 39884 ACCGAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACTTGCTCCTGGTAGATGAT 39943 ||||| | ||| || ||||| ||||| || | || | ||| || ||||| |||||||| Sbjct 59781 GCCGAGCGAGTAGCCCGCCATCACCTGCGCGATCTGCATCACCTGTTCCTGATAGATGAT 59840 Query 39944 GA 39945 || Sbjct 59841 GA 59842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164713189251044