Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_021305.1 Length=76179 Score E Sequences producing significant alignments: (Bits) Value seq64713 325 2e-84 >seq64713 Length=190342 Score = 325 bits (360), Expect = 2e-84 Identities = 534/762 (70%), Gaps = 11/762 (1%) Strand=Plus/Minus Query 65736 ATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGC 65795 ||| || | ||||| ||| ||||| ||| ||||| |||| || |||| ||| Sbjct 164043 ATTTCCTCGGGCTCGCTCGGGCTGGATATCGCGCTGGGTGTCGGCGGCCTGCCGAAGGGG 163984 Query 65796 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 65855 |||||||| || || ||||| || ||||| || || ||| | || ||| || ||| || Sbjct 163983 CGGGTGGTCGAGATTTACGGTCCGGAATCCTCCGGCAAGACCACGCTGGCGCTGCACACG 163924 Query 65856 GTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTG 65915 |||||| | || |||||| || |||| ||||| |||||||||||| ||| | || Sbjct 163923 GTGGCCGAGGCCCAGAAGAAAGGCGGCATTTGCGCCTTCATCGACGCTGAACACGCGCTC 163864 Query 65916 GACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCG 65975 || || | || ||| |||||| || | |||| | || || | |||||| Sbjct 163863 GATCCCGTCTATGCCCGCAAGCTCGGCGTCAATGTCGATGAACTTCTGATCTCGCAGCCG 163804 Query 65976 GACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCC 66035 || |||||| ||||| ||||| |||| ||| || || || |||| | ||| Sbjct 163803 GATCATGGCGAACAGGCGCTGGAAATCGCCGACACGCTGGTGCGCTCCGGCGCG--GTCG 163746 Query 66036 ATCGTC--GTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACA 66093 || | || || ||||| |||||||| ||||||||||||||||| ||||||||||| | Sbjct 163745 ATGTGCTGGTTGTGGACTCGGTGGCGGCGCTGGTGCCGCGCGCCGAACTCGAAGGCGAGA 163686 Query 66094 TCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCA 66153 | || ||||| | ||||||||| || || || ||| ||||| |||||||||||| Sbjct 163685 TGGGCGACAGCCTTCCCGGCCTGCAGGCACGGCTGATGAGCCAGGCGCTGCGCAAGCTCA 163626 Query 66154 CTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGA 66213 | | | | ||| || || |||| || | ||| |||||||| | ||| ||||| Sbjct 163625 CCGCCTCGATCAACAAGTCCCACACCATGGTGATCTTCATCAACCAGATCCGCATGAAGA 163566 Query 66214 TCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCT 66273 |||| ||| |||||| || || |||||||| ||||| || ||||||| ||||| Sbjct 163565 TCGGT---GTGATGTACGGCTCGCCGGAAACCACCACTGGCGGTAACGCTTTGAAGTTCT 163509 Query 66274 ACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAG-AAGGAAGGCGATGAGGCT 66332 |||| || || ||| | || | || ||||||| | | || |||||| |||| || | Sbjct 163508 ACGCGTCCGTGCGCCTCGACATTCGCCGCATCGGC-CAGATCAAGGAACGCGACGAAGTG 163450 Query 66333 GTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAAC 66392 |||||||| ||||| || ||||| || |||||||||||||| || ||| | | Sbjct 163449 ATCGGCAACTCGACCCGCGTCAAGGTGGTGAAGAACAAGCTGGCGCCTCCGTTCAAGCAG 163390 Query 66393 GCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTG 66452 | ||||||| | || ||||||| |||||| ||||| || |||| | ||||| || Sbjct 163389 GTCGAGTTCGACATCATGTACGGCGAGGGCGTCTCGAAGCTGGGCGAAATTCTCGATCTC 163330 Query 66453 GCCGTG-TCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTT 66493 | |||| ||| || | || ||||||| ||||| ||||| Sbjct 163329 GGCGTGAAAGCA-GGAATCGTCGAGAAGTCCGGCGCATGGTT 163289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243448354295820