Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_021306.1 Length=75736 Score E Sequences producing significant alignments: (Bits) Value seq64713 329 2e-85 >seq64713 Length=190342 Score = 329 bits (364), Expect = 2e-85 Identities = 535/762 (70%), Gaps = 11/762 (1%) Strand=Plus/Minus Query 65069 ATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGC 65128 ||| || | ||||| ||| ||||| ||| ||||| |||| || |||| ||| Sbjct 164043 ATTTCCTCGGGCTCGCTCGGGCTGGATATCGCGCTGGGTGTCGGCGGCCTGCCGAAGGGG 163984 Query 65129 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 65188 |||||||| || || ||||| || ||||| || || ||| | || ||| || ||| || Sbjct 163983 CGGGTGGTCGAGATTTACGGTCCGGAATCCTCCGGCAAGACCACGCTGGCGCTGCACACG 163924 Query 65189 GTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTG 65248 |||||| | || |||||| || |||| ||||| |||||||||||| ||| | || Sbjct 163923 GTGGCCGAGGCCCAGAAGAAAGGCGGCATTTGCGCCTTCATCGACGCTGAACACGCGCTC 163864 Query 65249 GACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCG 65308 || || | || ||| |||||| || | |||| | || || | |||||| Sbjct 163863 GATCCCGTCTATGCCCGCAAGCTCGGCGTCAATGTCGATGAACTTCTGATCTCGCAGCCG 163804 Query 65309 GACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCC 65368 || |||||| ||||| ||||| |||| ||| || || || |||| | ||| Sbjct 163803 GATCATGGCGAACAGGCGCTGGAAATCGCCGACACGCTGGTGCGCTCCGGCGCG--GTCG 163746 Query 65369 ATCGTC--GTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACA 65426 || | || || ||||| |||||||| ||||||||||||||||| ||||||||||| | Sbjct 163745 ATGTGCTGGTTGTGGACTCGGTGGCGGCGCTGGTGCCGCGCGCCGAACTCGAAGGCGAGA 163686 Query 65427 TCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCA 65486 | || ||||| | ||||||||| || || || ||| ||||| |||||||||||| Sbjct 163685 TGGGCGACAGCCTTCCCGGCCTGCAGGCACGGCTGATGAGCCAGGCGCTGCGCAAGCTCA 163626 Query 65487 CCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGA 65546 ||| | | ||| || || |||| || | ||| |||||||| | ||| ||||| Sbjct 163625 CCGCCTCGATCAACAAGTCCCACACCATGGTGATCTTCATCAACCAGATCCGCATGAAGA 163566 Query 65547 TCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCT 65606 |||| ||| |||||| || || |||||||| ||||| || ||||||| ||||| Sbjct 163565 TCGGT---GTGATGTACGGCTCGCCGGAAACCACCACTGGCGGTAACGCTTTGAAGTTCT 163509 Query 65607 ACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAG-AAGGAAGGCGATGAGGCT 65665 |||| || || ||| | || | || ||||||| | | || |||||| |||| || | Sbjct 163508 ACGCGTCCGTGCGCCTCGACATTCGCCGCATCGGC-CAGATCAAGGAACGCGACGAAGTG 163450 Query 65666 GTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAAC 65725 |||||||| ||||| || ||||| || |||||||||||||| || ||| | | Sbjct 163449 ATCGGCAACTCGACCCGCGTCAAGGTGGTGAAGAACAAGCTGGCGCCTCCGTTCAAGCAG 163390 Query 65726 GCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTG 65785 | ||||||| | || ||||||| |||||| ||||| || |||| | ||||| || Sbjct 163389 GTCGAGTTCGACATCATGTACGGCGAGGGCGTCTCGAAGCTGGGCGAAATTCTCGATCTC 163330 Query 65786 GCCGTG-TCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTT 65826 | |||| ||| || | || ||||||| ||||| ||||| Sbjct 163329 GGCGTGAAAGCA-GGAATCGTCGAGAAGTCCGGCGCATGGTT 163289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242031915880361