Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq59660 118 3e-21 seq59183 118 3e-21 seq39879 118 3e-21 >seq59660 Length=8530 Score = 118 bits (130), Expect = 3e-21 Identities = 201/287 (70%), Gaps = 6/287 (2%) Strand=Plus/Plus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 || ||||| || || || || || || || || || |||||||| ||||| | ||| Sbjct 5429 CGTCGCTGGATGTAGCCCGTCTCAGCCGTCTTCACGGCCGTATCAATCAGACCCTCGCGA 5488 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCA 302712 |||||||| || |||||||| | ||| | ||| || || | | | ||| |||| Sbjct 5489 CCACCCATGGCGTGGAAGAAGAACTCCTGCGGGGTGAGGCCACGCAGGTACGAGTTCTCG 5548 Query 302713 ACGAAACCACGCGCCT-CGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTT 302771 ||||| ||||||| || ||||| || |||| ||| |||||| ||||| || | || Sbjct 5549 ACGAAGCCACGCGACTCCGGGCCAA-AGTCGTCCTTCACAAAGTGCGGCAGCGTTCGGTC 5607 Query 302772 CTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCAT 302831 ||| | | ||||| ||||| || || ||||||||||| |||| ||| | | || Sbjct 5608 GCGGAAGCAGAAGGGGATGCGCTTGCCCTCGACGTTCTGCTGGCCCACGCAGGCGAGCAC 5667 Query 302832 CTGCGAAATATTTAAATCACTG--CCCTTGGAGCCAGCATTTACCAT 302876 |||||| || || ||| | | |||||||| || ||| | ||||| Sbjct 5668 CTGCGAGATGTT--GATCGCCGAACCCTTGGACCCGGCAATCACCAT 5712 >seq59183 Length=11291 Score = 118 bits (130), Expect = 3e-21 Identities = 201/287 (70%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 || ||||| || || || || || || || || || |||||||| ||||| | ||| Sbjct 8130 CGTCGCTGGATGTAGCCCGTCTCAGCCGTCTTCACGGCCGTATCAATCAGACCCTCGCGA 8071 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCA 302712 |||||||| || |||||||| | ||| | ||| || || | | | ||| |||| Sbjct 8070 CCACCCATGGCGTGGAAGAAGAACTCCTGCGGGGTGAGGCCACGCAGGTACGAGTTCTCG 8011 Query 302713 ACGAAACCACGCGCCTC-GGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTT 302771 ||||| ||||||| ||| |||| || |||| ||| |||||| ||||| || | || Sbjct 8010 ACGAAGCCACGCGACTCCGGGCCAAA-GTCGTCCTTCACAAAGTGCGGCAGCGTTCGGTC 7952 Query 302772 CTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCAT 302831 ||| | | ||||| ||||| || || ||||||||||| |||| ||| | | || Sbjct 7951 GCGGAAGCAGAAGGGGATGCGCTTGCCCTCGACGTTCTGCTGGCCCACGCAGGCGAGCAC 7892 Query 302832 CTGCGAAATATTTAAATCACTG--CCCTTGGAGCCAGCATTTACCAT 302876 |||||| || || ||| | | |||||||| || ||| | ||||| Sbjct 7891 CTGCGAGATGTT--GATCGCCGAACCCTTGGACCCGGCAATCACCAT 7847 >seq39879 Length=9073 Score = 118 bits (130), Expect = 3e-21 Identities = 201/287 (70%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 || ||||| || || || || || || || || || |||||||| ||||| | ||| Sbjct 5912 CGTCGCTGGATGTAGCCCGTCTCAGCCGTCTTCACGGCCGTATCAATCAGACCCTCGCGA 5853 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCA 302712 |||||||| || |||||||| | ||| | ||| || || | | | ||| |||| Sbjct 5852 CCACCCATGGCGTGGAAGAAGAACTCCTGCGGGGTGAGGCCACGCAGGTACGAGTTCTCG 5793 Query 302713 ACGAAACCACGCGCCTC-GGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTT 302771 ||||| ||||||| ||| |||| || |||| ||| |||||| ||||| || | || Sbjct 5792 ACGAAGCCACGCGACTCCGGGCCAAA-GTCGTCCTTCACAAAGTGCGGCAGCGTTCGGTC 5734 Query 302772 CTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCAT 302831 ||| | | ||||| ||||| || || ||||||||||| |||| ||| | | || Sbjct 5733 GCGGAAGCAGAAGGGGATGCGCTTGCCCTCGACGTTCTGCTGGCCCACGCAGGCGAGCAC 5674 Query 302832 CTGCGAAATATTTAAATCACTG--CCCTTGGAGCCAGCATTTACCAT 302876 |||||| || || ||| | | |||||||| || ||| | ||||| Sbjct 5673 CTGCGAGATGTT--GATCGCCGAACCCTTGGACCCGGCAATCACCAT 5629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470549742743521