Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq38569 143 9e-30 >seq38569 Length=123680 Score = 143 bits (158), Expect = 9e-30 Identities = 236/334 (71%), Gaps = 10/334 (3%) Strand=Plus/Plus Query 40122 AGCACGCGAGCCG-CGTCCTTCATCGCGTTGCGCGCCTTGATCCGTCCGTACGTCGCGAT 40180 |||||||| |||| |||| || | || |||||||| | | ||| | || ||| Sbjct 60514 AGCACGCG-GCCGACGTCGCGCAGCACGCCGCGCGCCTGCAGCGTCCCGAAGGTGATGAT 60572 Query 40181 CTGCGCGACCTTGTCGGCCCCGTACT--TCCGGGTGACGTACTGGATGACCTCGCCACGA 40238 |||| |||||| ||| ||||| ||| | ||||| ||||||||||||| || Sbjct 60573 CTGCCCGACCTGCTCGCGGCCGTAGCGCTCCTGC--ACGTAGCGGATGACCTCGCCGCGG 60630 Query 40239 CG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGA 40296 || || | || |||||||||||||| || ||||| |||||||| || || || |||| Sbjct 60631 CGATCCTGACA--GAAGTCGATGTCGAAGTCCGGCATCGACACGCGTTCCGGATTGAGGA 60688 Query 40297 AGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGG 40356 |||||||||| | || ||| | | ||| ||||||||||| || || | |||| Sbjct 60689 AGCGCTCGAACAGCAGGCCGAACCGGATCGGATCGAGGTCGGTAATGGTCAGCGCATAGG 60748 Query 40357 CGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCG 40416 |||||||||| || || | || || || || || |||||| | || | |||| | Sbjct 60749 CGACCAGCGAGCCCGCGCCCGAACCGCGGCCCGGCCCGACCGGAATGCCCTGGGCCTTGG 60808 Query 40417 CCCAGCGGATGAAGTCCGCGACGACGAGGAAGTA 40450 |||| ||||||||||| |||| |||||||| Sbjct 60809 CCCACTTGATGAAGTCCGACACGATCAGGAAGTA 60842 Score = 86.0 bits (94), Expect = 2e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 39284 CTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTG 39343 || |||| ||| || || | ||||||||||||| || ||||| ||||||||||| | Sbjct 59721 CTGCTTGTCCATTTCCGCGCGGATCTTCTTGCCCATTGCGCGGCGCAGCAGGTCGGCGTC 59780 Query 39344 ACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACCTGCTCCTGGTAGATGAT 39403 || || | ||| || ||||| ||||| || | || | |||||| ||||| |||||||| Sbjct 59781 GCCGAGCGAGTAGCCCGCCATCACCTGCGCGATCTGCATCACCTGTTCCTGATAGATGAT 59840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163194402806694