Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_021347.1 Length=142563 Score E Sequences producing significant alignments: (Bits) Value seq38569 147 2e-30 >seq38569 Length=123680 Score = 147 bits (162), Expect = 2e-30 Identities = 256/368 (70%), Gaps = 11/368 (3%) Strand=Plus/Minus Query 105020 CATCACCAGCAAGAACTTCGCCGGGTACTTCAACGTCGTCGCCGACTACACCAAGTGGGC 105079 ||||||| ||| ||||| | || |||||| |||| | |||| || ||||||||| Sbjct 60867 CATCACCCGCATGAACTATTCGGGCTACTTCCTGATCGTGTCGGACTTCATCAAGTGGGC 60808 Query 105080 TAAGGACC---GCATGCTCGTCGGTCCCGGCCGTGGTTCGGCCGGTGGCTCGCTCGTCTC 105136 |||| || |||| | ||||| || ||||| ||||||| || |||||||| ||| | Sbjct 60807 CAAGGCCCAGGGCATTCCGGTCGGGCCGGGCCGCGGTTCGGGCGCGGGCTCGCTGGTCGC 60748 Query 105137 GTACCTGATGGACATCACCGAGCTCGACCCGATCAAGTACGACCTGATGTTCGAGCGGTT 105196 || | || ||| ||||| ||||| |||||| || || |||| |||||||||| || Sbjct 60747 CTATGCGCTGACCATTACCGACCTCGATCCGATCCGGTTCGGCCTGCTGTTCGAGCGCTT 60688 Query 105197 CATCTCGCCGGAGCGGAAGAACTTCCCCGACATCGATCTCGACTTCCCGCAGAAGCGTCG 105256 | || ||||| || | | || ||| |||| |||||||| ||| | || || Sbjct 60687 CCTCAATCCGGAACGCGTGTCGATGCCGGACTTCGACATCGACTTCTGTCAGGATCGCCG 60628 Query 105257 CGGCGAGGTCGTCGACTACATCGCCGACCGCTACGGCCACGACTGCGTCTGCTCGATCGG 105316 |||||||||| || |||| | || |||||||||| ||| ||| | |||| Sbjct 60627 CGGCGAGGTCATCCGCTACGTGCAGGAGCGCTACGGCCGCGAGCAGGTCGGGCAGATCAT 60568 Query 105317 CACC--CGGGCCAAGCT--CGGCCCGAAGAGCGCGATCCGCGACATCGCCCGCGCGCTGC 105372 |||| |||| | ||| ||| || ||| | | |||||| ||| ||||| ||||| Sbjct 60567 CACCTTCGGG--ACGCTGCAGGCGCG--CGGCGTGCTGCGCGACGTCGGCCGCGTGCTGC 60512 Query 105373 ACATCCCG 105380 | || ||| Sbjct 60511 AGATGCCG 60504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 455690310045640