Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_021531.1 Length=223989 Score E Sequences producing significant alignments: (Bits) Value seq34497 159 5e-34 >seq34497 Length=166879 Score = 159 bits (176), Expect = 5e-34 Identities = 226/315 (72%), Gaps = 2/315 (1%) Strand=Plus/Plus Query 98895 ATGAAACAGTATCAAGATTTAATGGCT-GAAGTCTTTGCGAAAGGTACGCCGAAGAAAGA 98953 ||||| |||||||| ||| | | | ||| ||| |||| || || |||| || Sbjct 39794 ATGAACCAGTATCACGATCTGCTTGAACGAATTCTCGGCGAC-GGCGCGGAAAAGACCGA 39852 Query 98954 CCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCAAGA 99013 ||| ||||| || || ||||| || | |||||||| |||||||| || || || Sbjct 39853 CCGCACCGGGACCGGAACGCTGTCCGTGTTCGGCCATCAGATGCGGTTTAATCTGGCGTC 39912 Query 99014 AGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAACTGCT 99073 ||||||||| || | || |||||| || ||| || || ||||||||||||| Sbjct 39913 GGGTTTCCCGATGCTGACCACCAAGAAGCTTCATCTGAAATCGATCGTCCATGAACTGCT 39972 Query 99074 GTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCATTTG 99133 |||||| ||| ||||||||||||||| ||||| |||| || || || || ||| || Sbjct 39973 GTGGTTTCTGGCGGGCGACACCAATATCAAGTACTTGAACGACAACGGCGTCCGCATCTG 40032 Query 99134 GGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGCGGGC 99193 ||| || ||||||||| |||| ||| | ||||| || || ||||| ||||||||| | Sbjct 40033 GGATGAGTGGGCGGACGAAAACGGCAATCTCGGCCCCGTTTACGGATCGCAGTGGCGCTC 40092 Query 99194 ATGGACTGCGCATGA 99208 |||| | || || || Sbjct 40093 ATGGCCCGCTCAGGA 40107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716034529475320