Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_021560.1 Length=53102 Score E Sequences producing significant alignments: (Bits) Value seq38278 190 7e-44 seq34564 84.2 7e-12 >seq38278 Length=22228 Score = 190 bits (210), Expect = 7e-44 Identities = 263/364 (72%), Gaps = 8/364 (2%) Strand=Plus/Plus Query 31444 GCCACCGCCCTGACTGTCGAGCATGGTCAGCGTCGCATTGAAGCCGTTCAACACCACTTC 31503 ||||| || || | ||||||||| |||| |||| ||||||| | | || ||||| Sbjct 20655 GCCACTGCTCTTGCCGTCGAGCATTGTCAAAGTCGAATTGAAGTTCTGAAGAACGACTTC 20714 Query 31504 GGTTGTGTAGCGATCACCACCGTCGGAGTGCTGCCACTTGCGGGTTTGCAGCTTGCCCTC 31563 ||| | ||||| || || || || |||||| ||||||||||||| || |||||| Sbjct 20715 GGTCGAATAGCGGTCCTTGCCATCCTTGTCCTGCCATTTGCGGGTTTGCAACTGGCCCTC 20774 Query 31564 GATGTAAACCTTCGATCCCTTTTTCAGGTATTGCTCGCAAACCTTGACGAGACCTTCGGT 31623 | ||| ||||| |||||||| || || || |||||| | |||| |||||||||| | Sbjct 20775 CAGGTAGACCTTGGATCCCTTCTTTAGATACTGCTCGGCGATCTTGCAGAGACCTTCGCT 20834 Query 31624 GAAGACGACGACGCTATGCCACTCGGTGCGCTCCTTGCGGTCGCCGCTGTCGCGGTCGCG 31683 ||||| ||||||| ||||||||| || || || || |||||| | |||||| Sbjct 20835 GAAGATCACGACGCGATGCCACTCCGTCTTTTCTTTCCGCTCGCCGGAATTCTTGTCGCG 20894 Query 31684 CCAGCTTTCGGAAGTCGCAAGGCGAAGGCTGGCGAT---GCTACC-CCCGGCTTGTGTCT 31739 |||| | || || || || | || ||| | ||||| || ||| || || | | || Sbjct 20895 CCAGGTCTCCGACGTTGCGACGCTTAGGTTCGCGATCGGGCGACCATCCTGCGTCCG-CT 20953 Query 31740 TTCGGATTTCCGGATCGGCGCCGAGATGGCCGATAAGAATGACTTTGTTGACGCTACCGG 31799 | |||||| || ||||||||||||| || | ||||||||||| |||||||| || | Sbjct 20954 T---GATTTCAGGGTCGGCGCCGAGATTTCCAACCAGAATGACTTTATTGACGCTTCCCG 21010 Query 31800 CCAT 31803 |||| Sbjct 21011 CCAT 21014 >seq34564 Length=203146 Score = 84.2 bits (92), Expect = 7e-12 Identities = 180/267 (67%), Gaps = 18/267 (7%) Strand=Plus/Plus Query 28503 CATAGGCGACTTCG---TCTTCCG---CGCTGCCGGCATCAGGATTGGTCACGAGAAGCT 28556 |||| |||||||| ||||||| | || || | ||||||||||||||| || Sbjct 75195 CATACTCGACTTCGAGTTCTTCCGTCGCACTTCCCGAGTCAGGATTGGTCACGGACAGGA 75254 Query 28557 TCAGGGTGCCTTCGGAGAAGTGGAACTTCATCGCCCGGCCGCGCTCGGTTGAAACCGACG 28616 |||| |||| | || | || |||| || ||||| || ||| | |||| || || Sbjct 75255 TCAGCTTGCCGGCAGACAGCGCGAGTTTCACGGCGCGGCCACGTTCGCTGGAAATCGTCG 75314 Query 28617 ACACACGGTCAACGGCCGAGGCGATTGCTTTGGCGTCCGCCGTCACGTCGGTGGCATTGT 28676 | || |||||||| || | ||| | || ||| | ||| || || |||||| Sbjct 75315 AGACGCGGTCAACCGCGGCCTCGAAATCCTTCTTGTCGACGATCAGTTCCTTGTCATTGT 75374 Query 28677 TGGCTGGGATGACCCGGACGTAGTCCGGGAACGTGCCGTCGATCAGTTTCGA------TA 28730 | || ||||| ||| | || |||||||| |||||||||||||| || || || Sbjct 75375 TCTGCGGAATGACACGGCCATAATCCGGGAAGGTGCCGTCGATCAGCTTTGAGGTCAGTA 75434 Query 28731 CGAGGCGCGTCCCGCCGACGGTGAAAC 28757 ||| ||| |||||| |||||||| Sbjct 75435 CGA----CGT--CGCCGATGGTGAAAC 75455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169669229227344