Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq57533 93.3 3e-14 seq36668 93.3 3e-14 seq42015 87.8 1e-12 seq63813 86.0 5e-12 seq64782 84.2 2e-11 seq65093 82.4 6e-11 seq58611 82.4 6e-11 seq41198 82.4 6e-11 >seq57533 Length=4825 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || ||||| || | || ||||| ||||||||| ||||| ||| ||| | Sbjct 3055 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATTACCCTCGAAGTCGAGAGCTCG 2996 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | || || |||||||| || || || || | ||| ||||| Sbjct 2995 -GACACGATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGTATTCCCCCCGATCA 2937 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || || || ||||| ||||||| | || |||| |||||||| Sbjct 2936 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAA 2877 Query 107735 CATTCAAAAGGAGTCTACGTTGCAC 107759 ||| || |||||||| ||| | ||| Sbjct 2876 CATCCAGAAGGAGTCCACGCTCCAC 2852 >seq36668 Length=3779 Score = 93.3 bits (102), Expect = 3e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 105087 CACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCCGGCGAG 105146 || ||||| ||||| |||||||||||||| | || |||||||||| | ||| |||| Sbjct 2896 CATGGCTTCCACGTCCACGAGTTCGGCGACAACACCAACGGCTGCGTGAGCGCGGGCGGC 2837 Query 105147 CACTTCAACCC-TACGCGCCAAAATCACGGCGCTCCAGACGCCGCAGAAAGGCACGTCGG 105205 ||||||||||| | || || | || ||||||| || |||| | || | |||||||| Sbjct 2836 CACTTCAACCCCTTCG-GCAAGAAGCACGGCGGACCCGACGATGAGGAGCGTCACGTCGG 2778 Query 105206 CGACCTGGGCAATGT 105220 ||| || ||||| || Sbjct 2777 CGATCTCGGCAACGT 2763 >seq42015 Length=1920 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || ||||| || | || ||||| ||||| ||| |||| ||| | | Sbjct 382 AATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGAG 323 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || || |||||| || || || ||| | || ||||| Sbjct 322 CGACACCATCGAGAACGTCAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTCCTGATCA 263 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || || || ||||| ||||||| | || |||| |||||||| Sbjct 262 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACTACAA 203 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 202 CATCCAGAAGGAGTCCAC 185 >seq63813 Length=14923 Score = 86.0 bits (94), Expect = 5e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 105087 CACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCCGGCGAG 105146 || ||||| ||||| |||||||||||||| | || |||||||||| | ||| |||| Sbjct 6135 CATGGCTTCCACGTCCACGAGTTCGGCGACAACACCAACGGCTGCGTGAGCGCAGGCGGC 6076 Query 105147 CACTTCAA-CCCTACGCGCCAAAATCACGGCGCTCCAGACGCCGCAGAAAGGCACGTCGG 105205 |||||||| |||| || || | || ||||||| || || | | || | ||||| || Sbjct 6075 CACTTCAACCCCTTCG-GCAAGAAGCACGGCGGACCCGAGGATGAGGAGCGTCACGTTGG 6017 Query 105206 CGACCTGGGCAATGTC 105221 ||| || ||||| ||| Sbjct 6016 CGATCTCGGCAACGTC 6001 >seq64782 Length=5112 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || || || || | || ||||| ||||| ||| ||||| ||| ||| Sbjct 2564 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAAGTCGAGAGCTC- 2622 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || || ||||| || || || ||| | || ||||| Sbjct 2623 CGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCCGATCA 2682 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | ||| || || ||||| ||||||| | || |||| |||||||| Sbjct 2683 GCAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAA 2742 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || ||||||||||| Sbjct 2743 CATCCAGAAGGAGTCTAC 2760 >seq65093 Length=7051 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 107558 GCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGCGA 107617 ||| || || ||||| || | || ||||| || ||||| |||| ||| | |||| Sbjct 4903 GCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATTACTCTCGAGGTCGAGTCGAGCGA 4844 Query 107618 TACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCA 107677 || ||| | || || |||||||| || || |||||| | ||| ||| ||||| Sbjct 4843 CACGATCGAGAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCCCCGGACCAGCA 4784 Query 107678 GAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAACAT 107737 | | || || | || || || ||||| ||||||| | || | || ||||||||||| Sbjct 4783 GCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACGCTCGCCGACTACAACAT 4724 Query 107738 TCAAAAGGAGTCTAC 107752 || |||||||| || Sbjct 4723 CCAGAAGGAGTCGAC 4709 >seq58611 Length=1931 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| || || || || || | || ||||| ||||| ||| |||| ||| ||| Sbjct 1604 AATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGAGCTC 1663 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 | || || ||| | || || || ||||| || || |||||| | ||| |||| Sbjct 1664 G-GACACGATCGAGAACGTCAAGCAGAAGATCCAAGACAAGGAAGGCATCCCCCCTGATC 1722 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||| | || || | || || || ||||| ||||||| | || |||| ||||||| Sbjct 1723 AGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACA 1782 Query 107734 ACATTCAAAAGGAGTCTAC 107752 |||| || |||||||| || Sbjct 1783 ACATCCAGAAGGAGTCCAC 1801 >seq41198 Length=3949 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || ||||| || || | || ||||| ||||| ||| ||||| ||| | | Sbjct 1260 AATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAAGTCGAGTCGAG 1319 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || || ||||| || || || ||| | || || || Sbjct 1320 CGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCA 1379 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || || || ||||| ||||||| | || |||| |||||||| Sbjct 1380 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAA 1439 Query 107735 CATTCAAAAGGAGTC 107749 ||| || |||||||| Sbjct 1440 CATCCAGAAGGAGTC 1454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398549959477537