Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq57533 107 1e-18 seq35527 95.1 9e-15 seq65788 86.0 5e-12 seq48913 86.0 5e-12 seq65093 82.4 6e-11 >seq57533 Length=4825 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || || | || |||||||| || || || ||||| || || || Sbjct 2829 CCGCCGCGCAGACGAAGAACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 2888 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || ||||| || |||||||| | || | | |||||||| || ||| Sbjct 2889 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGA 2948 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | ||||| || || | || | ||||| || || ||| Sbjct 2949 ATACCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCCGAGCTCTCGACT 3008 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || | ||| || || || |||||||| Sbjct 3009 TCGAGGGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 3055 >seq35527 Length=2822 Score = 95.1 bits (104), Expect = 9e-15 Identities = 161/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 29555 GTTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAAT 29614 |||| || || | || ||| || || | || || ||||| || || || ||||| || | Sbjct 256 GTTG-CCACCGCGCAGACGAAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGT 198 Query 29615 CCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCG 29674 | || | |||||| || ||||| || ||||| || | || | | |||||||| | Sbjct 197 CGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCGG 138 Query 29675 GCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTT 29734 | ||||||||||| ||||| || | || || || || | || | ||||| || | Sbjct 137 GAGGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCCGAGCTCT 78 Query 29735 CTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| || || || || |||||||| | || || || || |||||||| Sbjct 77 CGACTTCGAGGGTAATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 26 >seq65788 Length=3562 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || || | || || ||||| || || || ||||| || || || Sbjct 1224 CCACCGCGCAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 1165 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || ||||| || ||||| || | || | | ||||| || || ||| Sbjct 1164 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGA 1105 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | || || ||||| | || | ||||| || ||| Sbjct 1104 ATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCGATGGTGTCGCTCGACTCGACT 1045 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || | ||| || || || |||||||| Sbjct 1044 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 998 >seq48913 Length=4472 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 29555 GTTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAAT 29614 |||| || || | || ||| || || | || || ||||| || || || ||||| || | Sbjct 505 GTTG-CCGCCGCGCAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGT 563 Query 29615 CCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCG 29674 | || | |||||| || ||||| || ||||| ||| | || | | ||||| || | Sbjct 564 CGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGG 623 Query 29675 GCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTT 29734 | ||||||||||| ||||| || | || || || || | || | ||||| || | Sbjct 624 GGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGGAGCTCT 683 Query 29735 CTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || || || || || || | ||| || || || |||||||| Sbjct 684 CGACCTCGAGGGTGATGGTCTTACCGGTCAGGGTCTTGACGAAGATCTGCAT 735 >seq65093 Length=7051 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || || ||||| || || |||||||| || || || | |||||| || ||||| || Sbjct 4310 TGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 4369 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 ||||| || | || | | ||||| || || ||||||||||| ||||| || | || Sbjct 4370 TTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTC 4429 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || || || | || | ||||| || || || || || || || || || || || Sbjct 4430 TGCTTCACGTTCTCGATGGTGTCGGAGCTCTCGACCTCGAGGGTGATCGTCTTACCGGTC 4489 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | ||| || || || |||||||| Sbjct 4490 AGGGTCTTGACGAAGATCTGCAT 4512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384903550544853