Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq65788 107 4e-18 seq65093 107 4e-18 seq43845 104 5e-17 seq57533 98.7 2e-15 seq37153 96.9 7e-15 seq64782 93.3 8e-14 >seq65788 Length=3562 Score = 107 bits (118), Expect = 4e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || | ||| ||||| || || ||||| || || || || | Sbjct 408 CCGCCGCGCAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCG 349 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || || ||||||||||| || | || || || || || Sbjct 348 AGCGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGTCAGGGGGG 289 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || ||||| || || ||||| ||||| || || || ||||| || | | || || Sbjct 288 ATGCCCTCCTTGTCCTGGATCTTCTGCTTG-ACGTTCTCGATCGTGTCGCTCGACTCGAC 230 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| ||||||||||| |||| ||||| || || |||||||| Sbjct 229 CTCGAGAGTGATCGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 182 >seq65093 Length=7051 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| ||||| | ||| ||||| || || ||||| || || || || | Sbjct 4677 TACCGCCGCGCAGACGAAGAACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGG 4736 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||||| || || || || ||||| ||||| || | || || || || | Sbjct 4737 CGAGCGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGGG 4796 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || |||||| || || || || ||||| || | | || | Sbjct 4797 GGATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTCTCGATCGTGTCGCTCGACTCGA 4856 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 | || | ||| ||||||||||| || | ||||| || || |||||| Sbjct 4857 CCTCGAGAGTAATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGC 4903 >seq43845 Length=2684 Score = 104 bits (114), Expect = 5e-17 Identities = 165/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| ||||| | ||| || || || || ||||| || || || || | Sbjct 2656 TACCGCCGCGCAGACGAAGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 2597 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||||| || || || || ||||| ||||| || | || || || |||| Sbjct 2596 CCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAG 2537 Query 82702 GTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || || ||||| || |||||||| ||||| || || || || || || | | || Sbjct 2536 GGATGCCCTCCTTGTCCTGAATCTTCTGCTTC-ACGTTCTCGATGGTGTCGCTCGACTCG 2478 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 || || | || ||||||||||| || | ||||| || || ||||||||| || Sbjct 2477 ACCTCGAGGGTAATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATTGTT 2424 >seq57533 Length=4825 Score = 98.7 bits (108), Expect = 2e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || | ||| ||||| || || ||||| || || || || | Sbjct 2373 CCACCGCGCAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCC 2432 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||| || || || || || || ||||| || | || || || || || Sbjct 2433 AGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 2492 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || ||||| || || ||||| ||||| || || || || || || | | || || Sbjct 2493 ATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACGTTCTCGATGGTGTCGCTCGACTCGAC 2551 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| ||||||||||| |||| ||||| || || |||||||| Sbjct 2552 CTCGAGAGTGATCGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2599 >seq37153 Length=844 Score = 96.9 bits (106), Expect = 7e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| || || || || ||||| || || || || | || | | || Sbjct 514 ACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCC 455 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || || || ||||| || | || || || ||||| || |||||||| Sbjct 454 GTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGAGGGATGCCTTCCTT 395 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || |||||| || || || || ||||| || | || || || | ||| || Sbjct 394 GTCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCGGACGACTCGACCTCGAGAGTAAT 335 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||| |||| ||||| || || |||||||| Sbjct 334 CGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 299 >seq64782 Length=5112 Score = 93.3 bits (102), Expect = 8e-14 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || ||||| || ||||| || || || || | || | | ||| Sbjct 2778 CGGAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCG 2719 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || | || ||||| || || || || ||||| Sbjct 2718 TCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCGGGCGGGATGCCCTCCTTG 2659 Query 82716 TCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773 || || ||||| ||| || || || || || || || || | || ||||| | || | Sbjct 2658 TCCTGGATCTTCTGC-TTCACGTTCTCGATGGTGTC-GGAGCTCTCGACTTCGAGGGTGA 2601 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| |||| ||||| || || |||||||| Sbjct 2600 TGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980981431651987