Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq48913 105 4e-18 seq54603 95.1 8e-15 seq66251 93.3 3e-14 seq57533 91.5 1e-13 seq43845 91.5 1e-13 seq37129 91.5 1e-13 seq41198 89.7 3e-13 seq65788 86.0 4e-12 seq63570 82.4 5e-11 seq42015 82.4 5e-11 >seq48913 Length=4472 Score = 105 bits (116), Expect = 4e-18 Identities = 167/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || | || ||| | || | ||| || ||| ||| || || |||||||| |||| Sbjct 736 ACCGCCGCGCAGACGAAGAACGAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 795 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| |||| || | || || ||||| || || | |||||||||||| | || Sbjct 796 CAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGG 855 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || ||||| || ||||| ||| || | || | ||||||||| || || | Sbjct 856 GATACCCTCCTTGTCCTGGATCTTCTGCTTC-ACGTTCTCGATGGTGTCGCTCGACTCGA 914 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTG 33757 | || | ||||| || || || || | || || || ||||||||||| |||| || Sbjct 915 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATCGTTGTTG 971 >seq54603 Length=2606 Score = 95.1 bits (104), Expect = 8e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| || || |||||||| |||| ||| ||||| |||| || | || Sbjct 2527 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGC 2468 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | ||||||||||| | || | ||| || ||||| || ||| Sbjct 2467 TTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTC 2408 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || ||| || | || | ||||||||| || || || || | ||||| || ||||| || Sbjct 2407 TGCTTC-ACGTTCTCGATGGTGTCGCTCGACTCAACCTCGAGGGTGATGGTCTTACCAGT 2349 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || || ||||| ||||| Sbjct 2348 CAGGGTCTTCACGAAGATTTGCAT 2325 >seq66251 Length=5749 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| |||| ||| ||||| |||| || | || Sbjct 3149 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGC 3090 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | |||||||| || | || | ||| || ||||| || ||| Sbjct 3089 TTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTC 3030 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || || | | | || | ||||||||| || || || || | || ||||| ||||| || Sbjct 3029 TGCTTGA-CGTTCTCGATGGTGTCGCTAGACTCGACCTCGAGGGTAATCGTCTTACCGGT 2971 Query 33726 TAACGTTTTTACAAAGATCTGCATA 33750 | || || || |||||||||||| Sbjct 2970 CAGGGTCTTCACGAAGATCTGCATA 2946 >seq57533 Length=4825 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | || | || ||||| ||| || || |||||||| |||| Sbjct 2373 CCACCGCGCAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCC 2432 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | || || ||||| || || | |||||||| || | || Sbjct 2433 AGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 2492 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||||| |||| | | || | ||||||||| || || || Sbjct 2493 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATGGTGTCGCTCGACTCGAC 2551 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | |||||||| || || || | || || || |||||||||||| Sbjct 2552 CTCGAGAGTGATCGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 2600 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| |||| || ||||| |||| || | || Sbjct 3081 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCGTCCTCGAGCTGC 3140 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | ||||||||||| | || | ||| || ||||| || ||| Sbjct 3141 TTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGGATCTTC 3200 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || ||| || | || | |||||||| || || || || | ||||| || || || || Sbjct 3201 TGCTTC-ACGTTCTCGATCGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 3259 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || || ||||||||||| Sbjct 3260 CAGGGTCTTCACGAAGATCTGCAT 3283 >seq43845 Length=2684 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| |||| || ||||| |||| || | || Sbjct 2630 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 2571 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || || || || | ||||||||| || | || | || || ||||| ||| ||| Sbjct 2570 TTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTC 2511 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || |||| | | || | ||||||||| || || || || | || ||||| || || || Sbjct 2510 TGCTTCA-CGTTCTCGATGGTGTCGCTCGACTCGACCTCGAGGGTAATCGTCTTGCCAGT 2452 Query 33726 TAACGTTTTTACAAAGATCTGCATAGTTGGTG 33757 | || || || ||||||||||| |||| || Sbjct 2451 GAGGGTCTTCACGAAGATCTGCATTGTTGTTG 2420 >seq37129 Length=1363 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| || || |||||||| |||| ||| ||||| |||| || | || Sbjct 1248 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGC 1189 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | ||||||||||| | || | ||| || ||||| || ||| Sbjct 1188 TTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTC 1129 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || ||| || | || | ||||||||| || || || || | ||||| || || || || Sbjct 1128 TGCTTC-ACGTTCTCGATGGTGTCGCTCGACTCAACCTCGAGGGTGATGGTCTTGCCAGT 1070 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || || ||||| ||||| Sbjct 1069 CAGGGTCTTCACGAAGATTTGCAT 1046 >seq41198 Length=3949 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| || ||||| |||| || | || || ||||| || Sbjct 1452 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 1393 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | ||||||||| || | || | || || ||||| || ||||| |||| | | Sbjct 1392 GATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGT 1334 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | ||||||||| || || || || | ||||| || || || || | || || | Sbjct 1333 TCTCGATGGTGTCGCTCGACTCGACTTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCA 1274 Query 33737 CAAAGATCTGCAT 33749 ||||||||||||| Sbjct 1273 CAAAGATCTGCAT 1261 >seq65788 Length=3562 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | || | || || ||| ||| || || |||||||| |||| Sbjct 1224 CCACCGCGCAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 1165 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | || || ||||| || || | |||||||| || | || Sbjct 1164 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGA 1105 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || ||||| || ||||| || | | | || | ||||||||| || || || Sbjct 1104 ATACCCTCCTTGTCCTGGATCTTCTGCTTGA-CGTTCTCGATGGTGTCGCTCGACTCGAC 1046 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | || || || |||||||||||| Sbjct 1045 TTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATA 997 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| || || |||||||| |||| ||| ||||| |||| || | || Sbjct 384 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGC 325 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || ||||| || | |||||||| || | || | || || ||||| || ||| Sbjct 324 TTACCAGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTC 265 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || || | | | || | |||||||| || || || || | |||||||| || || || Sbjct 264 TGCTTGA-CGTTCTCGATCGTGTCGCTCGACTCGACCTCGAGAGTGATCGTCTTGCCGGT 206 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || || ||||||||||| Sbjct 205 CAGGGTCTTCACGAAGATCTGCAT 182 >seq63570 Length=11955 Score = 82.4 bits (90), Expect = 5e-11 Identities = 154/224 (69%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| || || |||||||| |||| || || || |||| || | || Sbjct 6882 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGC 6823 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || || || || | |||||||| || | || | ||| || ||||| || ||| Sbjct 6822 TTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTC 6763 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || || | | | || | ||||||||| || || || || | ||||| || || || || Sbjct 6762 TGCTTGA-CGTTCTCGATGGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 6704 Query 33726 TAACGTTTTTACAAAGATCTGCATAGTTGGTGTGTTTATCGCGC 33769 | || || |||||||||||||| | ||| ||| | | |||| Sbjct 6703 GAGGGTCTTCACAAAGATCTGCATTGCTGGCTTGTCTGTAGCGC 6660 >seq42015 Length=1920 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| |||| || || || |||| || | || Sbjct 179 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGC 238 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | ||||||||||| | || | || || ||||| ||| ||| Sbjct 239 TTGCCGGCGAAGATGAGGCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTC 298 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || || || | || | ||||||||| || || || || | ||||| || || || || Sbjct 299 TGCTT-GACGTTCTCGATGGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 357 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || || ||||||||||| Sbjct 358 CAGGGTCTTGACGAAGATCTGCAT 381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328434659223360