Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq34497 167 2e-36 seq41976 116 4e-21 >seq34497 Length=166879 Score = 167 bits (184), Expect = 2e-36 Identities = 334/495 (67%), Gaps = 30/495 (6%) Strand=Plus/Plus Query 142243 TTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAG 142302 ||||| ||||||||||| || |||||||| || || || | || |||| |||||| Sbjct 39881 TTCGGCCATCAGATGCGGTTTAATCTGGCGTCGGGTTTCCCGATGCTGACCACCAAGAAG 39940 Query 142303 CTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATC 142362 || |||||||| |||||| || ||||| |||||||| || ||||| || || ||| Sbjct 39941 CTTCATCTGAAATCGATCGTCCATGAACTGCTGTGGTTTCTGGCGGGCGACACCAATATC 40000 Query 142363 AAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAAC 142422 ||||| | |||| || |||| ||||||||||| ||||| || | || ||||| Sbjct 40001 AAGTACTTGAACGACAACGGCGTCCGCATCTGGGATGAGTGGGCGGACGAAAACGGCAAT 40060 Query 142423 CTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGGAGAT 142482 ||||| || || ||||| ||||||| || ||| | |||| || Sbjct 40061 CTCGGCCCCGTTTACGGATCGCAGTGGCGCTCATGGCC------------CGCTCAGGAC 40108 Query 142483 GACGTCACAGACGAACCGATCGATCAGAT---CCGCCGGATCATTACTGACTTGAAGAAG 142539 | || |||| ||||||||||| | || |||| | ||| | | || Sbjct 40109 GGCGGCACA---------ATCGATCAGATTTCCAACCTGATCGAGA-TGATCCGCAAAA- 40157 Query 142540 TCTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACATG 142599 ||| | || || || | || || | ||| ||||| || || ||||||||| | ||| Sbjct 40158 -ATCCGGACTCGCGACGCCTGATTGTGAGCGCCTGGAATCCGGCCGAAGTCGACAAGATG 40216 Query 142600 GCACTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCGACTCGAAGAAGCGTCTGTCA 142659 || || || || || || |||| || || | |||| | | ||| ||||| Sbjct 40217 GCGCTGCCGCCCTGCCATTGCTTGTTTCAGTTTTATGTCGCCAAGGGCAAG---CTGTCC 40273 Query 142660 TGCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTCG 142719 |||||||| || |||||||| || || ||||||||||| ||||||||||| || || Sbjct 40274 TGCCAGCTCTACCAGCGTTCAGCGGATGTCTTCCTCGGCGTGCCGTTCAACATCGCGTCC 40333 Query 142720 TACGCGCTTCTCACA 142734 || ||||| || ||| Sbjct 40334 TATGCGCTGCTGACA 40348 >seq41976 Length=13014 Score = 116 bits (128), Expect = 4e-21 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 148838 TCATCGAGCGTATNNNNNNNNNNGAAGAAGAGAAGAAGACGATCGGCGATGACATCAAGG 148897 ||||||||||||| || |||||||||||||||||| |||| |||||||||| Sbjct 2257 TCATCGAGCGTATCGAGCGCCTCGAGGAAGAGAAGAAGACGATCAGCGACGACATCAAGG 2316 Query 148898 ACGTCTACGGCGATGCCAAAGGAAATGGCTTCGACACCAAGATCTTGAAGAAGGTCATCA 148957 ||||||| ||||| ||||| || || ||||||||| |||| | || | ||||| Sbjct 2317 ACGTCTATGGCGAAGCCAAGGGCAACGGCTTCGACGTCAAGGTGCTGCGCACCATCATCC 2376 Query 148958 ACATCCGCAAGAAGGATGAGCAGGAGCGCATGGAAGAGGAAGCAATCCTCGATACGTATC 149017 || |||||| |||| | | |||||| ||| ||||| | ||||| || || || Sbjct 2377 GTATGCGCAAGCAGGACGCCGACGAGCGCCAGGAGCAGGAAACCATCCTGGAAACCTACA 2436 Query 149018 TCGCTGCTCTCGGCATG 149034 | || ||||||||| Sbjct 2437 TGCAGGCGCTCGGCATG 2453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500078574216080