Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_026594.1 Length=56537 Score E Sequences producing significant alignments: (Bits) Value seq38237 93.3 2e-14 >seq38237 Length=22261 Score = 93.3 bits (102), Expect = 2e-14 Identities = 136/190 (72%), Gaps = 7/190 (4%) Strand=Plus/Plus Query 4175 TTCCGCCTGTTCGGGTATGCCGGCACGGGCAAGACCACCCTGGCCCGCCACATCGCTGAG 4234 ||||| |||||||| |||||||| || ||||||||||| ||||| || || ||||| || Sbjct 15662 TTCCGGCTGTTCGGCTATGCCGGAACCGGCAAGACCACGCTGGCGCGGCATATCGCGGAC 15721 Query 4235 AACGTGGACGGGCTTGTGCTGTTCGCCGCCCCGACCGGCAAGGCCGCCTACGTCCTGAAG 4294 ||| |||| ||| ||||||||| || |||||||| || ||| || Sbjct 15722 GGCGTCAACGGCAACGTGAAGTTCGCCGCTTTCACGGGCAAGGCGGCGCTGGTCATGCGC 15781 Query 4295 ACCAAGGGCTGCCCGAACACCAGCACGATCCACCAGCTGATCTA---CACCC-CGAA--- 4347 | |||||||||| ||| | |||||| || ||||||||| ||||| |||| Sbjct 15782 AACAAGGGCTGCGACAACGCTTCCACGATTCATTCGCTGATCTACCGCACCCGCGAATCC 15841 Query 4348 GGAGAAGAGC 4357 || ||||||| Sbjct 15842 GGCGAAGAGC 15851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180652453303854