Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq57661 107 3e-18 seq42187 107 3e-18 seq37095 107 3e-18 >seq57661 Length=1717 Score = 107 bits (118), Expect = 3e-18 Identities = 367/564 (65%), Gaps = 15/564 (3%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||| ||||| || || |||||||| || | || || | |||||| || | ||| Sbjct 1135 GCAGGCAAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAG 1194 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 || ||||| || || ||||| ||||||||||| |||| |||| ||| | || || |||| Sbjct 1195 GCCGGGCATCAGGCCGCGCTTCTTGAGCCAAAAGATGG-AGCAGAAGCTGCCGGAGAAGA 1253 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTC--------TC-CGTAACTTGTAT 39785 ||||||| || || || || ||| | | || | ||| || || || | Sbjct 1254 AGATGCCCTCGACGGCGGCGAATCCGATGAGGCGCTCGGCGAAGGTCTCGGCACCGCCCT 1313 Query 39786 CATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTA 39845 | || | ||||||||| ||||| || ||||||||||| || | |||| || || | Sbjct 1314 CCTTGTTGATCCACTTCATGGCCCAGTCGGCTTTCTTCTTGACCGAGGGCACGGTCTCGA 1373 Query 39846 TAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGAC 39905 | || ||||| | || || | || || || || || || || | || Sbjct 1374 TGGCGCGGAAGAGGCGGTCCTTCTCGACGTGGTCCTTGACGTAGGTGTCGATGAGGAGCG 1433 Query 39906 TATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTT 39965 ||||| || || |||||||| || || || || || || ||||| || || | || | Sbjct 1434 AGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGCAGCGCGCCT 1493 Query 39966 CAGTAATTTGTACCTCTGAACA-AAATCTTTCCGCCAAATTTTCATTCACTATTCCATCA 40024 | | | || ||||| | || || | | || | || || ||| || || || Sbjct 1494 CGGGCACCTGGACCTC-CATCATGAAGCGGCCGGCGAGGTTCTCGGCCACGATGCCGTCG 1552 Query 40025 CTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTA 40084 || || || || || |||| || || || || || | | || || | || | | Sbjct 1553 CTGGCCGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGCTGAGCGA 1611 Query 40085 TT-CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTC 40143 || ||||| || || || | ||| |||||||| || ||||| || || ||||| Sbjct 1612 TTCCCAGTGCTTCATGTCGGAGCTCAGATCGACTTCTTCGGCCGTCCAGAAGGAGGCCTC 1671 Query 40144 TGCCTTTTTGTACATGTTCCATAT 40167 ||||| |||||||| | ||| || Sbjct 1672 GGCCTTCTTGTACATCTCCCAGAT 1695 >seq42187 Length=1775 Score = 107 bits (118), Expect = 3e-18 Identities = 367/564 (65%), Gaps = 15/564 (3%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||| ||||| || || |||||||| || | || || | |||||| || | ||| Sbjct 583 GCAGGCAAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAG 524 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 || ||||| || || ||||| ||||||||||| |||| |||| ||| | || || |||| Sbjct 523 GCCGGGCATCAGGCCGCGCTTCTTGAGCCAAAAGATGG-AGCAGAAGCTGCCGGAGAAGA 465 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTC--------TC-CGTAACTTGTAT 39785 ||||||| || || || || ||| | | || | ||| || || || | Sbjct 464 AGATGCCCTCGACGGCGGCGAATCCGATGAGGCGCTCGGCGAAGGTCTCGGCACCGCCCT 405 Query 39786 CATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTA 39845 | || | ||||||||| ||||| || ||||||||||| || | |||| || || | Sbjct 404 CCTTGTTGATCCACTTCATGGCCCAGTCGGCTTTCTTCTTGACCGAGGGCACGGTCTCGA 345 Query 39846 TAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGAC 39905 | || ||||| | || || | || || || || || || || | || Sbjct 344 TGGCGCGGAAGAGGCGGTCCTTCTCGACGTGGTCCTTGACGTAGGTGTCGATGAGGAGCG 285 Query 39906 TATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTT 39965 ||||| || || |||||||| || || || || || || ||||| || || | || | Sbjct 284 AGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGCAGCGCGCCT 225 Query 39966 CAGTAATTTGTACCTCTGAACA-AAATCTTTCCGCCAAATTTTCATTCACTATTCCATCA 40024 | | | || ||||| | || || | | || | || || ||| || || || Sbjct 224 CGGGCACCTGGACCTC-CATCATGAAGCGGCCGGCGAGGTTCTCGGCCACGATGCCGTCG 166 Query 40025 CTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTA 40084 || || || || || |||| || || || || || | | || || | || | | Sbjct 165 CTGGCCGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGCTGAGCGA 107 Query 40085 TT-CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTC 40143 || ||||| || || || | ||| |||||||| || ||||| || || ||||| Sbjct 106 TTCCCAGTGCTTCATGTCGGAGCTCAGATCGACTTCTTCGGCCGTCCAGAAGGAGGCCTC 47 Query 40144 TGCCTTTTTGTACATGTTCCATAT 40167 ||||| |||||||| | ||| || Sbjct 46 GGCCTTCTTGTACATCTCCCAGAT 23 >seq37095 Length=1954 Score = 107 bits (118), Expect = 3e-18 Identities = 367/564 (65%), Gaps = 15/564 (3%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||| ||||| || || |||||||| || | || || | |||||| || | ||| Sbjct 1688 GCAGGCAAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAG 1629 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 || ||||| || || ||||| ||||||||||| |||| |||| ||| | || || |||| Sbjct 1628 GCCGGGCATCAGGCCGCGCTTCTTGAGCCAAAAGATGG-AGCAGAAGCTGCCGGAGAAGA 1570 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTC--------TC-CGTAACTTGTAT 39785 ||||||| || || || || ||| | | || | ||| || || || | Sbjct 1569 AGATGCCCTCGACGGCGGCGAATCCGATGAGGCGCTCGGCGAAGGTCTCGGCACCGCCCT 1510 Query 39786 CATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTA 39845 | || | ||||||||| ||||| || ||||||||||| || | |||| || || | Sbjct 1509 CCTTGTTGATCCACTTCATGGCCCAGTCGGCTTTCTTCTTGACCGAGGGCACGGTCTCGA 1450 Query 39846 TAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGAC 39905 | || ||||| | || || | || || || || || || || | || Sbjct 1449 TGGCGCGGAAGAGGCGGTCCTTCTCGACGTGGTCCTTGACGTAGGTGTCGATGAGGAGCG 1390 Query 39906 TATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTT 39965 ||||| || || |||||||| || || || || || || ||||| || || | || | Sbjct 1389 AGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGCAGCGCGCCT 1330 Query 39966 CAGTAATTTGTACCTCTGAACA-AAATCTTTCCGCCAAATTTTCATTCACTATTCCATCA 40024 | | | || ||||| | || || | | || | || || ||| || || || Sbjct 1329 CGGGCACCTGGACCTC-CATCATGAAGCGGCCGGCGAGGTTCTCGGCCACGATGCCGTCG 1271 Query 40025 CTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTA 40084 || || || || || |||| || || || || || | | || || | || | | Sbjct 1270 CTGGCCGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGCTGAGCGA 1212 Query 40085 TT-CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTC 40143 || ||||| || || || | ||| |||||||| || ||||| || || ||||| Sbjct 1211 TTCCCAGTGCTTCATGTCGGAGCTCAGATCGACTTCTTCGGCCGTCCAGAAGGAGGCCTC 1152 Query 40144 TGCCTTTTTGTACATGTTCCATAT 40167 ||||| |||||||| | ||| || Sbjct 1151 GGCCTTCTTGTACATCTCCCAGAT 1128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686331513258120