Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_027402.1 Length=240413 Score E Sequences producing significant alignments: (Bits) Value seq34497 100 4e-16 >seq34497 Length=166879 Score = 100 bits (110), Expect = 4e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 197668 CGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTG-C 197726 ||| || || || || || ||||| || || || || | |||||||| ||| || || | Sbjct 39850 CGACCGCACCGGGACCGGAACGCTGTCCGTGTTCGGCCATCAGATGCGGTTTAATCTGGC 39909 Query 197727 GTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAAC 197786 || ||||||||| | | || || ||||| || || ||| || || ||||||||| Sbjct 39910 GTCG-GGTTTCCCGATGCTGACCACCAAGAAGCTTCATCTGAAATCGATCGTCCATGAAC 39968 Query 197787 TGCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACCA 197846 |||||||||| || || || ||||| | ||| || || | || |||||||| || Sbjct 39969 TGCTGTGGTTTCTGGCGGGCGACACCAATATCAAGTACTTGAACGACAACGGCGTCCGCA 40028 Query 197847 TTTGGCGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCCCCTGTATGG 197895 | ||| |||||| || ||||| || || || |||||| | || || Sbjct 40029 TCTGGGATGAGTGGGCGGACGAAAACGGCAATCTCGGCCCCGTTTACGG 40077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 768547160083640