Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq48913 116 3e-21 seq57533 109 5e-19 seq41198 107 2e-18 seq37129 107 2e-18 seq49680 105 6e-18 seq54603 104 2e-17 seq64782 98.7 8e-16 seq37153 98.7 8e-16 seq63570 95.1 1e-14 seq43845 89.7 4e-13 >seq48913 Length=4472 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||||| || | || | ||| | ||| || || || || || ||||||||| | Sbjct 737 CCGCCGCGCAGACGAAGAACGAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 796 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| |||| |||||||| || |||||| | ||||||||||| ||||| || || Sbjct 797 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGG 856 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| || || |||||| | |||| | | || | ||||| | | || || Sbjct 857 ATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCGCTCGACTCGACC 916 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||| || || || ||||| ||||| ||||| Sbjct 917 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 963 >seq57533 Length=4825 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||||| || | || | || | ||| || || || || || ||||||||| | Sbjct 2829 CCGCCGCGCAGACGAAGAACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 2888 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| |||| |||||||| || || ||| | ||||||||||| ||||| || || Sbjct 2889 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCGGGGGGA 2948 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| || || |||||| | |||| | | || | ||||| | | || ||| Sbjct 2949 ATACCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCCGAGCTCTCGACT 3008 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | ||||| || || || || || ||||| |||||| Sbjct 3009 TCGAGGGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATA 3056 >seq41198 Length=3949 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27054 GAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCG 27113 || || || || || ||||||||| || | |||| |||| |||||||| || |||||| Sbjct 1454 GACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 1395 Query 27114 TAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGG 27173 | ||||||||||| || || || || | ||||| || || |||||| | |||| | Sbjct 1394 AAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACG 1335 Query 27174 GTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTC 27233 | || | ||||| | | || ||||| || || || | ||||| || || || ||| Sbjct 1334 TTCTCGATGGTGTCGCTCGACTCGACTTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTC 1275 Query 27234 ACAAAGATTTGCATAGC 27250 |||||||| ||||| || Sbjct 1274 ACAAAGATCTGCATTGC 1258 >seq37129 Length=1363 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | |||| |||| |||||||| || ||| Sbjct 1242 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 1183 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| ||||| || || | |||||| || || |||||| | ||| Sbjct 1182 GCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTC 1123 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | ||||| || || || || | ||||| ||||| || Sbjct 1122 ACGTTCTCGATGGTGTCGCTCGACTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 1063 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||||||||| Sbjct 1062 TTCACGAAGATTTGCAT 1046 >seq49680 Length=1134 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27018 TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG 27077 ||||| ||||| | || | || | || | || || || || || || ||||||||| Sbjct 814 TTGCCGCCGCGGAGGCGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 873 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 || | |||| |||| |||||||| || |||||| | ||||||||||| ||||| || Sbjct 874 GCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCAGGG 933 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | ||||| || || |||||| | |||| | | || | ||||| | | || Sbjct 934 GGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCCGAGCTCTCG 993 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || || | || || ||||| || ||||| ||||| |||||| Sbjct 994 ACCTCGAGGGTGATCGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCATA 1044 >seq54603 Length=2606 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | |||| |||| |||||||| || ||| Sbjct 2521 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 2462 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| ||||| || || | |||||| || || |||||| | ||| Sbjct 2461 GCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTC 2402 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | ||||| || || || || | || || ||||| || Sbjct 2401 ACGTTCTCGATGGTGTCGCTCGACTCAACCTCGAGGGTGATGGTCTTACCAGTCAGGGTC 2342 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||||||||| Sbjct 2341 TTCACGAAGATTTGCAT 2325 >seq64782 Length=5112 Score = 98.7 bits (108), Expect = 8e-16 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| |||| |||||||| || || Sbjct 2532 GTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTGCGGCCGTCCTCGAGCTGCTTGCCA 2473 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| || || || || | ||||| || || |||||| | ||| Sbjct 2472 GCGAAGATGAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTC 2413 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || || | ||||| ||||| || Sbjct 2412 ACGTTCTCGATGGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 2353 Query 27231 TTCACAAAGATTTGCATAGCTG 27252 ||||||||||| ||||| |||| Sbjct 2352 TTCACAAAGATCTGCATTGCTG 2331 >seq37153 Length=844 Score = 98.7 bits (108), Expect = 8e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||| || || || || || ||||||||| || | | || |||| |||||||| || || Sbjct 268 CGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCC 209 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | ||||| ||||| || || || || | || || || || |||||| | || Sbjct 208 AGCGAAGATGAGGCGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTCTGCTT 149 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || | | || | ||||| | | || ||||| || || |||| ||||||||||| || Sbjct 148 CACGTTCTCGATGGTGTCCGAGCTCTCGACTTCGAGGGTGATAGTCTTGCCCGTCAGGGT 89 Query 27230 TTTCACAAAGATTTGCATA 27248 || || ||||| |||||| Sbjct 88 CTTGACGAAGATCTGCATA 70 >seq63570 Length=11955 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || | | || |||| |||||||| || || Sbjct 6876 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCA 6817 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| || || || || | |||||| || || |||||| | || Sbjct 6816 GCGAAGATGAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTG 6757 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || || | ||||| || || || Sbjct 6756 ACGTTCTCGATGGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 6697 Query 27231 TTCACAAAGATTTGCATAGCTG 27252 ||||||||||| ||||| |||| Sbjct 6696 TTCACAAAGATCTGCATTGCTG 6675 >seq43845 Length=2684 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || | |||| |||| |||||||| || || Sbjct 2624 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCA 2565 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || || || || | ||||| || || ||||| | ||| Sbjct 2564 GCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTC 2505 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || || | ||||| || || || Sbjct 2504 ACGTTCTCGATGGTGTCGCTCGACTCGACCTCGAGGGTAATCGTCTTGCCAGTGAGGGTC 2445 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 2444 TTCACGAAGATCTGCAT 2428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424586207823096