Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq65323 120 4e-22 seq58101 105 8e-18 seq49189 105 8e-18 seq38874 105 8e-18 >seq65323 Length=85180 Score = 120 bits (132), Expect = 4e-22 Identities = 243/359 (68%), Gaps = 4/359 (1%) Strand=Plus/Minus Query 111352 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGC 111411 ||| || ||||| ||||||||||||||||| |||||||| ||||| | ||| || || Sbjct 56608 GCAAGCGTCCTTATAGAGCATGTAGGGCGTGCCCGTCTCGACTTGTGACTCGAGGATCGC 56549 Query 111412 CTTCCAAACATCGGCGGC--TGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTT 111469 ||| | || ||| || || |||| ||| || || ||| |||||| Sbjct 56548 GAACCACAGCTCCTGGGCCTTGATAGTGCGGCG--GGCGCGGCCTTCCCGCTCGTAGCGG 56491 Query 111470 GTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGA 111529 | |||||| | || |||| || ||| |||| ||||| || || | || ||| Sbjct 56490 GCGTAGAGTTCCTCGAACTTGTCTCCCCAGACGTCCTGAAGACCCGGCGCTTCGTTGGGA 56431 Query 111530 CAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCAC 111589 ||| || ||||| | ||||| |||| || ||||||||||| || || ||||||||| Sbjct 56430 TCGAACAGCGACCAGTAGCCACCAGCCTCGACGCGCTTCATGAAGAGATCGGGAATCCAC 56371 Query 111590 AGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCA 111649 ||| | ||||| || | | || ||| || | || ||||| | | || Sbjct 56370 AGGCCGTAGAAGAGGTCGCGAGCGCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGATCG 56311 Query 111650 AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG 111708 |||||||| | ||| |||| ||||| ||||| || |||| |||| | ||||||||| Sbjct 56310 AGGAACTCGAAGATGTCCGAATGCCAGGGCTCCAGGTAGATCGCGAAGGCTCCCTTTCG 56252 Score = 89.7 bits (98), Expect = 6e-13 Identities = 167/243 (69%), Gaps = 3/243 (1%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 ||||||||| ||| || ||||| || ||| || || || || |||||| || || Sbjct 60524 GGCAAACTCTGCGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGCGAGGCC 60583 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| || ||||| | ||| | || | ||||| || || ||||||||||| Sbjct 60584 GGGCATGAGACCGCGTTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCCGAGAAGAAGAT 60643 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAG-CGAGACTTTGC--ATC 122834 ||||| || || || | | ||||| ||||| |||| | |||||| | | | Sbjct 60644 GCCCTCGACGGCGGCGAATCCGACGAGGCGCTCGGCAAAGGTGTCGAGACCCTCCTTGTT 60703 Query 122835 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTC 122894 | ||| ||| ||||| | |||||||||| | | || || || | |||||| | Sbjct 60704 GATCCACCGCATGGCCCACTCGGCCTTCTTCTTCACCGAGGGCACCGTCTCGATGGCGTT 60763 Query 122895 AAA 122897 ||| Sbjct 60764 AAA 60766 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 111836 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 111895 || || || || || | ||| ||||| |||| ||| | | || || | ||||| | | Sbjct 56038 CCGATGCCTCCCGCGCTCTTGGAGATGAGCGCGCACCGCTTGAGGGTCTCGTAGATGCTG 55979 Query 111896 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 111955 | ||| ||||||||||| || | | |||||||||||| |||||| || || || Sbjct 55978 TCGATGGAGTCCTCCTTCATGTCCAAGAGGAAGCAACTGCTCATCTGGGGGACCGGCGTG 55919 Query 111956 CCAGCATTGAAGAGGGTTGGTGTTGCGTG 111984 ||||| ||||||||||| || || ||||| Sbjct 55918 CCAGCGTTGAAGAGGGTCGGGGTGGCGTG 55890 >seq58101 Length=8023 Score = 105 bits (116), Expect = 8e-18 Identities = 172/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 111836 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 111895 || || || || ||| |||| ||||| | ||||||| | | || || | ||||| || Sbjct 5927 CCGATGCCGCCGGCCGACTTGGAGATGAGGGCACACTGCTTGAGGGTATCGTAGATGCCC 5986 Query 111896 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 111955 | ||| ||||||||||| ||| || ||||||||| |||| |||||| | || || Sbjct 5987 TCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCAAGACGACAGCTGCGGGCGCGGGGTT 6046 Query 111956 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTAT 112015 || || |||||||| || || || ||||| |||| | || |||| |||||| Sbjct 6047 CCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGTCGTAG 6106 Query 112016 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATG 112075 ||||| | || | |||| ||| ||| | ||||| || || ||||||| |||| Sbjct 6107 GTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGGCCGACGGCCACGCGCATGAGCATG 6166 Query 112076 TACTGTGG 112083 | ||| || Sbjct 6167 TGCTGGGG 6174 >seq49189 Length=7476 Score = 105 bits (116), Expect = 8e-18 Identities = 172/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 111836 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 111895 || || || || ||| |||| ||||| | ||||||| | | || || | ||||| || Sbjct 6605 CCGATGCCGCCGGCCGACTTGGAGATGAGGGCACACTGCTTGAGGGTATCGTAGATGCCC 6664 Query 111896 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 111955 | ||| ||||||||||| ||| || ||||||||| |||| |||||| | || || Sbjct 6665 TCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCAAGACGACAGCTGCGGGCGCGGGGTT 6724 Query 111956 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTAT 112015 || || |||||||| || || || ||||| |||| | || |||| |||||| Sbjct 6725 CCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGTCGTAG 6784 Query 112016 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATG 112075 ||||| | || | |||| ||| ||| | ||||| || || ||||||| |||| Sbjct 6785 GTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGGCCGACGGCCACGCGCATGAGCATG 6844 Query 112076 TACTGTGG 112083 | ||| || Sbjct 6845 TGCTGGGG 6852 >seq38874 Length=7777 Score = 105 bits (116), Expect = 8e-18 Identities = 172/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 111836 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 111895 || || || || ||| |||| ||||| | ||||||| | | || || | ||||| || Sbjct 1851 CCGATGCCGCCGGCCGACTTGGAGATGAGGGCACACTGCTTGAGGGTATCGTAGATGCCC 1792 Query 111896 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 111955 | ||| ||||||||||| ||| || ||||||||| |||| |||||| | || || Sbjct 1791 TCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCAAGACGACAGCTGCGGGCGCGGGGTT 1732 Query 111956 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTAT 112015 || || |||||||| || || || ||||| |||| | || |||| |||||| Sbjct 1731 CCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGTCGTAG 1672 Query 112016 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATG 112075 ||||| | || | |||| ||| ||| | ||||| || || ||||||| |||| Sbjct 1671 GTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGGCCGACGGCCACGCGCATGAGCATG 1612 Query 112076 TACTGTGG 112083 | ||| || Sbjct 1611 TGCTGGGG 1604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627504194056800