Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq64782 95.1 4e-14 seq57533 89.7 2e-12 seq49680 89.7 2e-12 seq42015 89.7 2e-12 seq65788 86.0 2e-11 seq58611 86.0 2e-11 seq45054 84.2 7e-11 >seq64782 Length=5112 Score = 95.1 bits (104), Expect = 4e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 ||||| || | || || || || || || |||||||| || || || || || || | Sbjct 2790 CCACCGCGCAGTCGGAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCC 2731 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || || || || || || || ||||||||||| || || |||||||| || || Sbjct 2730 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCGGGCGGG 2671 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || ||||| || || || || || || || | || || || ||| Sbjct 2670 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCGGAGCTCTCGACT 2611 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| ||||| || || || || || |||||||| Sbjct 2610 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2564 >seq57533 Length=4825 Score = 89.7 bits (98), Expect = 2e-12 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | ||||| || || || || ||||| || || || || || || Sbjct 3053 CATACCGCCACGCAGACGAAGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 3112 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || || || || || || || ||||| || || ||||||||||| Sbjct 3113 GGCCAGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGG 3172 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || || || || || |||| || | || Sbjct 3173 GGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTCGACTC 3232 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || | ||||| ||||| || || || || || ||||||||| Sbjct 3233 GACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATT 3284 >seq49680 Length=1134 Score = 89.7 bits (98), Expect = 2e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || ||||| || ||||| || || || || || || | | || || || || Sbjct 832 AGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCC 891 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || || ||||| ||||| ||||||||||| || || || || || ||| Sbjct 892 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCC 951 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || |||| || || || || || || || | ||| Sbjct 952 TGGATCTTCTGCTTCACGTTCTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATCGTC 1011 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || || || || || |||||||| Sbjct 1012 TTACCGGTCAGGGTCTTCACGAAGATCTGCAT 1043 >seq42015 Length=1920 Score = 89.7 bits (98), Expect = 2e-12 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| || || | | ||||| || || || || ||||| || || || || || || Sbjct 151 CATACCGCCGCGCAGACGAAGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 210 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || || || || || || || ||||| || || ||||||||||| Sbjct 211 GGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGG 270 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || |||||||| || || || || || || | || | || Sbjct 271 AGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTGACGTTCTCGATGGTGTCGCTCGACTC 330 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || | ||||| ||||| || || || || || ||||||||| Sbjct 331 GACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATT 382 >seq65788 Length=3562 Score = 86.0 bits (94), Expect = 2e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || ||||| ||||| || || || || || || | | || || || || Sbjct 393 AGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCC 334 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || || ||||| ||||| || || || || || ||| Sbjct 333 TCGAGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 274 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || |||| || | || || || || || | ||| Sbjct 273 TGGATCTTCTGCTTGACGTTCTCGATCGTGTCGCTCGACTCGACCTCGAGAGTGATCGTC 214 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || || || || || |||||||| Sbjct 213 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 182 >seq58611 Length=1931 Score = 86.0 bits (94), Expect = 2e-11 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || || || || || || ||||| || || || || || || Sbjct 1835 CATGCCACCACGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 1776 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || || || || || || || ||||| || || ||||||||||| Sbjct 1775 GGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGG 1716 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || ||||| || || || || || || || || || |||| || || || Sbjct 1715 GGGGATGCCTTCCTTGTCTTGGATCTTCTGCTTGACGTTCTCGATCGTGTCCGAGCTCTC 1656 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || | ||||| || || || || || || || ||||||||| Sbjct 1655 GACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATT 1604 >seq45054 Length=2354 Score = 84.2 bits (92), Expect = 7e-11 Identities = 74/91 (81%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 423765 AGCATGGATGCCCGAGT-GGTCTAAGGGGGCAGACTTAAGATCTGCTGG----CGAAAGC 423819 ||| |||||| |||||| ||||||||| ||||||||||||||||||||| || | Sbjct 2259 AGCCTGGATGGCCGAGTTGGTCTAAGGCGGCAGACTTAAGATCTGCTGGTGTTCGCGCAC 2318 Query 423820 CTCGTGGGTTCAAACCCCACTCCGTGCATTT 423850 | ||||||||| ||||||||||| ||| || Sbjct 2319 CGCGTGGGTTCGAACCCCACTCCAGGCAATT 2349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1513949125293099