Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq38569 181 3e-41 >seq38569 Length=123680 Score = 181 bits (200), Expect = 3e-41 Identities = 289/410 (70%), Gaps = 6/410 (1%) Strand=Plus/Plus Query 40037 GGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGGCCGAAG 40096 ||| | | |||||||||| | |||| || | || |||||||| | | |||||| Sbjct 60505 GGCATCTGCAGCACGCGGCCGACGTCGCGCAGCACGCCGCGCGCCTGCAGCGTCCCGAAG 60564 Query 40097 GTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATGACCTCG 40156 || |||||| |||||| ||| ||||| ||| ||||| |||||||||||| Sbjct 60565 GTGATGATCTGCCCGACCTGCTCGCGGCCGTAGCGCTCCTGCACGTAGCGGATGACCTCG 60624 Query 40157 CCGCGACG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGT 40214 ||||| || || | || |||||||||||| | ||| ||||| |||||||| || || | Sbjct 60625 CCGCGGCGATCCTGACA--GAAGTCGATGTCGAAGTCCGGCATCGACACGCGTTCCGGAT 60682 Query 40215 TCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAG-G 40273 | ||||| |||||||| | || ||| | | |||||||||||||| || || | Sbjct 60683 TGAGGAAGCGCTCGAACAGCAGGCCGAACCGGATCGGATCGAGGTCGGTAATGGTCAGCG 60742 Query 40274 CAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTC 40333 || |||||||||||||| || || |||| || || || || |||||| | ||| | Sbjct 60743 CA-TAGGCGACCAGCGAGCCCGCGCCCGAACCGCGGCCCGGCCCGACCGGAATGCCCTGG 60801 Query 40334 TCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGG 40393 |||||||||| ||||||||| | |||| |||||||||| || || ||| || Sbjct 60802 GCCTTGGCCCACTTGATGAAGTCCGACACGATCAGGAAGTAGCCCGAATAGTTCATGCGG 60861 Query 40394 ATGATCATGTCGATCTCGTACTGGAGCTGCTTGCCGTGCTCGTAGTCGGT 40443 |||| | |||| |||| | ||| |||||| || || | ||||| Sbjct 60862 GTGATGACATCGAGCTCGAAGGCGAGACGCTTGCTGTAGTCTTCCTCGGT 60911 Score = 80.6 bits (88), Expect = 9e-11 Identities = 91/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 39208 CTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTG 39267 || |||| ||| || || | ||||||||||||| || || |||||||||||||| | Sbjct 59721 CTGCTTGTCCATTTCCGCGCGGATCTTCTTGCCCATTGCGCGGCGCAGCAGGTCGGCGTC 59780 Query 39268 GCCCAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 39327 ||| || |||||| || | | |||||| || | |||||| ||||| |||||||| Sbjct 59781 GCCGAGCGAGTAGCCCGCCATCACCTGCGCGATCTGCATCACCTGTTCCTGATAGATGAT 59840 Query 39328 GA 39329 || Sbjct 59841 GA 59842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160278332833542