Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq38569 145 2e-30 >seq38569 Length=123680 Score = 145 bits (160), Expect = 2e-30 Identities = 235/338 (70%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 38944 GGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGTCCGTAC 39003 ||| | | |||||||||| | |||| || | || |||||||| | | ||| | Sbjct 60505 GGCATCTGCAGCACGCGGCCGACGTCGCGCAGCACGCCGCGCGCCTGCAGCGTCCCGAAG 60564 Query 39004 GTCGCGATCTGTGCGACCTTGTCACTGCCGTACTTCTCGGTGACGTACCGGATCACGTCG 39063 || |||||| |||||| || | |||||| ||| ||||| ||||| || ||| Sbjct 60565 GTGATGATCTGCCCGACCTGCTCGCGGCCGTAGCGCTCCTGCACGTAGCGGATGACCTCG 60624 Query 39064 CCACGGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTC 39123 || |||||| | | |||||||||||| | ||| ||||| || || || || || || Sbjct 60625 CCGCGGCGATCCTGACAGAAGTCGATGTCGAAGTCCGGCATCGACACGCGTTCCGGATTG 60684 Query 39124 AGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCG 39183 ||||| |||||||| | || ||| |||| || || |||||||| || || || Sbjct 60685 AGGAAGCGCTCGAACAGCAGGCCGAACCGGATCGGATCGAGGTCGGTAATGGTCAGCGCA 60744 Query 39184 TACGCGGCCAGCGAGCCAGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCC 39243 || ||| |||||||||| || | || ||||| || || |||||| | ||| | || Sbjct 60745 TAGGCGACCAGCGAGCCCGCGCCCGAACCGCGGCCCGGCCCGACCGGAATGCCCTGGGCC 60804 Query 39244 TTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTA 39281 || ||||| ||||||||| | |||| |||||||| Sbjct 60805 TTGGCCCACTTGATGAAGTCCGACACGATCAGGAAGTA 60842 Score = 91.5 bits (100), Expect = 5e-14 Identities = 201/295 (68%), Gaps = 20/295 (7%) Strand=Plus/Plus Query 38115 CTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTG 38174 || |||| ||| || || | ||||||||||||| ||||| || || |||||||| | Sbjct 59721 CTGCTTGTCCATTTCCGCGCGGATCTTCTTGCCCATTGCGCGGCGCAGCAGGTCGGCGTC 59780 Query 38175 ACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 38234 ||||| | ||| || |||| | |||||| || | |||||| ||||| |||||||| Sbjct 59781 GCCGAGCGAGTAGCCCGCCATCACCTGCGCGATCTGCATCACCTGTTCCTGATAGATGAT 59840 Query 38235 GAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAGCGGCTCCTCCACCTCGG-GGTGGATCG 38293 || |||||||| ||| || || | ||||||| || |||| | | | Sbjct 59841 GACGCCGAAGGT---TTCCTTGA----GG--ATCGGCTCCAGCA--TCGGATGCAGGTAT 59889 Query 38294 GCGTGATCTCCTGCTGACCGTTCTTGCGGAGGGCGTAGTTCGTGTGCGAGCCCATGCCCA 38353 || | ||||| | |||| ||||| | ||| ||| ||| || | ||| Sbjct 59890 TCGGG--CTCCTCGTCGCCGTGCTTGC---GTGCGCAGTACGT---CGGAATGTTCGCCA 59941 Query 38354 TCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAACTGGTCCGG 38408 |||| |||||||| ||||||||||| | || |||||||||||| |||| || Sbjct 59942 TCGGGCCCGGACGATACAGCGCGACCAGCGCAATGATGTCCTCGAAACGGTCGGG 59996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159587684682006