Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_028954.1 Length=36065 Score E Sequences producing significant alignments: (Bits) Value seq48231 89.7 1e-13 >seq48231 Length=140065 Score = 89.7 bits (98), Expect = 1e-13 Identities = 200/288 (69%), Gaps = 17/288 (6%) Strand=Plus/Minus Query 15145 GGCGGCGTGGACGCCTTTCTGATCGGGTCGGAATTGGTGGACCTGAC-CACGGCCAC-CG 15202 ||||| || || ||||| |||||||| |||||| || || ||||| | || | || Sbjct 125354 GGCGGTGTCGATGCCTTCCTGATCGGCTCGGAACTGAAGGCGCTGACACGCGTTCGTTCG 125295 Query 15203 ACACGGCCGGGGTTTATCCGTTCGTCAATTCGCTGGTGACGCTGGCGGCGGACGTCAAGG 15262 || |||| || |||||| || | ||||| ||| |||| |||| || |||| Sbjct 125294 GCAT--CCGGCGTGTATCCGGCGGTACAGGCGCTGACCACGTTGGCTTCGGATGTAAAGG 125237 Query 15263 GCATGTTGCCCGGCGC-GGC-----CGTGTCCTATGCCGCCGACTGGTCCGAATATCATT 15316 ||| | | ||||| ||| |||| |||||| ||| |||||| ||||||| | Sbjct 125236 C--TGTCGTC-GGCGCAGGCACTGTCGTGACCTATGGCGCGGACTGGACCGAATACGGCT 125180 Query 15317 CGCACCGCGA-CGGCGGGCAGGT-CTATTTCCACCTTGATCCGCTGTGGGCTTCGCCTTC 15374 | ||| | || |||| | |||| | ||||| | | |||||||||||||| || | | Sbjct 125179 CTCAC-GTGATCGGCAGCGAGGTGCGCTTTCCGC-TCGATCCGCTGTGGGCGTCATCGGC 125122 Query 15375 GGTCGATTTCGTGGGGATTGATAACTACCTGCCTTTGTCGGACTGGCG 15422 |||| ||| || || ||| |||| |||||||||||||||||| Sbjct 125121 CATCGACGCCGTCGGCATCGATTACTATGCGCCTTTGTCGGACTGGCG 125074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 115194356274942