Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq38569 145 2e-30 >seq38569 Length=123680 Score = 145 bits (160), Expect = 2e-30 Identities = 235/338 (70%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 39377 GGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGGGCCTTGATCCTGCCGTAC 39436 ||| | | |||||||||| | |||| || | || ||| |||| | | | ||| | Sbjct 60505 GGCATCTGCAGCACGCGGCCGACGTCGCGCAGCACGCCGCGCGCCTGCAGCGTCCCGAAG 60564 Query 39437 GTCGCGATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTGACGTACCGGATCACGTCG 39496 || |||||| |||||| |||| |||||| ||| ||||| ||||| || ||| Sbjct 60565 GTGATGATCTGCCCGACCTGCTCGCGGCCGTAGCGCTCCTGCACGTAGCGGATGACCTCG 60624 Query 39497 CCACGGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTC 39556 || |||||| | | |||||||||||| | ||| ||||| || ||||| || || || Sbjct 60625 CCGCGGCGATCCTGACAGAAGTCGATGTCGAAGTCCGGCATCGACACGCGTTCCGGATTG 60684 Query 39557 AGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCG 39616 ||||| |||||||| | || ||| |||| || || |||||||| || || || Sbjct 60685 AGGAAGCGCTCGAACAGCAGGCCGAACCGGATCGGATCGAGGTCGGTAATGGTCAGCGCA 60744 Query 39617 TACGCGGCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCC 39676 || ||| |||||||||| || | || || || || || |||||| | || | || Sbjct 60745 TAGGCGACCAGCGAGCCCGCGCCCGAACCGCGGCCCGGCCCGACCGGAATGCCCTGGGCC 60804 Query 39677 TTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTA 39714 || ||||| ||||||||| | |||| |||||||| Sbjct 60805 TTGGCCCACTTGATGAAGTCCGACACGATCAGGAAGTA 60842 Score = 89.7 bits (98), Expect = 2e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 38548 CTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTG 38607 || |||| ||| || || | ||||||||||||| ||||| || || |||||||| | Sbjct 59721 CTGCTTGTCCATTTCCGCGCGGATCTTCTTGCCCATTGCGCGGCGCAGCAGGTCGGCGTC 59780 Query 38608 ACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 38667 ||||| | ||| || |||| | |||||| || | |||||| ||||| |||||||| Sbjct 59781 GCCGAGCGAGTAGCCCGCCATCACCTGCGCGATCTGCATCACCTGTTCCTGATAGATGAT 59840 Query 38668 GAGCCCGAAGGT 38679 || |||||||| Sbjct 59841 GACGCCGAAGGT 59852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160112065685950