Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq57533 113 3e-20 seq65093 100 2e-16 seq48913 98.7 7e-16 seq41198 98.7 7e-16 seq65788 95.1 8e-15 seq42015 89.7 3e-13 >seq57533 Length=4825 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||| || || |||||||||||||| || || | || Sbjct 2827 ATGCAGATCTTCGTCAAGACTCTCACCGGTAAGACGATCACTCTCGAGGTCGAGAGCTCG 2768 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || ||||| || ||| | ||||| || || Sbjct 2767 GACACGATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGTATCCCGCCTGACCAG 2708 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || |||||||| || || || |||| ||||| | | ||| |||||| Sbjct 2707 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAAC 2648 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 2647 ATCCAGAAGGAGTCCAC 2631 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || |||||||||||||| || || || | Sbjct 2599 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACGATCACTCTCGAGGTCGAGTCGAGC 2540 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || ||||| || || | || || || || Sbjct 2539 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 2480 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || |||||||| || || || |||| ||||| | | ||| |||||| Sbjct 2479 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTGGCCGACTACAAC 2420 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 2419 ATCCAGAAGGAGTCGAC 2403 >seq65093 Length=7051 Score = 100 bits (110), Expect = 2e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 23613 GCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGA 23672 |||||| ||||| || ||||||||||| || ||||| |||||||| || || || | || Sbjct 4903 GCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATTACTCTCGAGGTCGAGTCGAGCGA 4844 Query 23673 CACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACA 23732 ||| | || | | || ||||| || ||||| ||||| | || || || || || Sbjct 4843 CACGATCGAGAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCCCCGGACCAGCA 4784 Query 23733 GCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACAT 23792 ||| | || || || ||||| || || || |||| || || | | ||| |||||||| Sbjct 4783 GCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACGCTCGCCGACTACAACAT 4724 Query 23793 ACAAAAAGAGTCCAC 23807 || || ||||| || Sbjct 4723 CCAGAAGGAGTCGAC 4709 >seq48913 Length=4472 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| ||||| || || | | Sbjct 735 ATGCAGATCTTCGTCAAGACCCTGACCGGTAAGACCATCACCCTCGAGGTCGAGAGCTCC 676 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || ||||| || ||| | || || || || Sbjct 675 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAG 616 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || || || |||| ||||| | | ||| |||||| Sbjct 615 CAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 556 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 555 ATCCAGAAGGAGTCCAC 539 >seq41198 Length=3949 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || || || ||||| ||||| || || | || Sbjct 1489 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACCATCACCCTCGAGGTCGAGAGCTCG 1548 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||| ||||| || || | ||||| ||||| Sbjct 1549 GACACGATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCGATCAG 1608 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || |||||||| || || || |||| || || | | || |||||| Sbjct 1609 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTGGCTGACTACAAC 1668 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 1669 ATCCAGAAAGAGTCCAC 1685 >seq65788 Length=3562 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || |||||||||||||| || || || | Sbjct 182 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACGATCACTCTCGAGGTCGAGTCGAGC 241 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || ||||| || || | || || || || Sbjct 242 GACACGATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 301 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||| || || || || || |||| ||||| | | ||| |||||| Sbjct 302 CAGCGCCTCATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAAC 361 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 362 ATCCAGAAGGAGTCGAC 378 >seq42015 Length=1920 Score = 89.7 bits (98), Expect = 3e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || ||||| |||||||| || || || | Sbjct 153 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACGATTACTCTCGAGGTCGAGTCGAGC 94 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || || ||||| || || | || || ||||| Sbjct 93 GACACCATTGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCTGATCAG 34 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGA 23762 |||||| | || || |||||||| || || || Sbjct 33 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337732634194364