Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq34497 91.5 1e-13 seq47568 84.2 2e-11 >seq34497 Length=166879 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 29675 TGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATC 29734 || ||||| || || | || || || || || || | || |||||||| || |||| | Sbjct 40413 TGCGCATCGCCAAGCGAATGCACGAAATCGCCGGGCTTCAGGCCGGTGACCTGCGCCACC 40354 Query 29735 ATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCT 29794 || || || || | ||| |||||||| || ||||| ||||| | ||| || Sbjct 40353 ATCATTGTCAGCAGCGCATAGGACGCGATGTTGAACGGCACGCCGAGGAAGACATCCGCT 40294 Query 29795 GACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCA 29854 || | ||||||||||||||| || |||| || | | || ||||||||| ||| | | Sbjct 40293 GAACGCTGGTAGAGCTGGCAGGACAGCTTGCCCTTGGCGACATAAAACTGAAACAAGCAA 40234 Query 29855 TGGCACGGAGGAAGGGCCAT 29874 ||||| || || || ||||| Sbjct 40233 TGGCAGGGCGGCAGCGCCAT 40214 >seq47568 Length=2992 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/151 (75%), Gaps = 6/151 (4%) Strand=Plus/Minus Query 53523 ACCCAGAGATGGGCGACAAGTTTGCATCCTT-CACGGCGCAAAAGGG-GACATG-CGGAG 53579 |||| | ||| || ||||||||||| || ||||| ||||||||| | |||| | || Sbjct 741 ACCCGGTGATCGGAGACAAGTTTGCGTCGAGGCACGG-GCAAAAGGGCGTCATGTCCCAG 683 Query 53580 CGGTCCTGACTCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 53639 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 682 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 625 Query 53640 TCAACCCCCACGCCTTTCCCTCCAGGATGAC 53670 ||||||| |||||||| ||||| | ||||| Sbjct 624 TCAACCCGCACGCCTTCCCCTCGCGTATGAC 594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405830388985438