Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_031007.1 Length=223935 Score E Sequences producing significant alignments: (Bits) Value seq34497 113 6e-20 >seq34497 Length=166879 Score = 113 bits (124), Expect = 6e-20 Identities = 188/269 (70%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 99183 GCGAAGGCGTGCCGAAGAAAGACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACC 99242 |||| |||| | |||| ||||| || || ||||| || ||||| | ||||| || | Sbjct 39831 GCGACGGCGCGGAAAAGACCGACCGCACCGGGACCGGAACGCTGTCCGTGTTCGGCCATC 39890 Query 99243 AGATGCGTTTCAATCTGCAAGAAGGCTTTCCGCTGGTAACGACTAAGC-GCTGTCACATG 99301 ||||||| || |||||| || || ||| || | || || ||| ||| ||| || Sbjct 39891 AGATGCGGTTTAATCTGGCGTCGGGTTTCCCGATGCTGACCACCAAGAAGCT-TCATCTG 39949 Query 99302 CGTTCGATTATTCACGAACTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTA 99361 ||||| | || |||||||||||||| ||| ||||| |||||| |||| || || Sbjct 39950 AAATCGATCGTCCATGAACTGCTGTGGTTTCTGGCGGGCGACACCAATATCAAGTACTTG 40009 Query 99362 AATGATAATGGTGTAACTATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCG 99421 || || || || || || ||||| || ||| | || || | ||| | ||||| || Sbjct 40010 AACGACAACGGCGTCCGCATCTGGGATGAGTGGGCGGACGAAAACGGCAATCTCGGCCCC 40069 Query 99422 GTATACGGTAAACAGTGGCGGTCTTGGCC 99450 || ||||| |||||||| || ||||| Sbjct 40070 GTTTACGGATCGCAGTGGCGCTCATGGCC 40098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715861874698600