Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_031010.1 Length=246390 Score E Sequences producing significant alignments: (Bits) Value seq34497 134 2e-26 >seq34497 Length=166879 Score = 134 bits (148), Expect = 2e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 202540 GAAAAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTT 202599 ||||||| ||||| ||||| ||||| |||| ||| ||||||| |||||||||||| Sbjct 39842 GAAAAGACCGACCGCACCGGGACCGGAACGCTGTCCGTGTTCGGCCATCAGATGCGGTTT 39901 Query 202600 GACCTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATT 202659 | ||| | || ||||| || ||||||| || ||| |||| || || ||| | Sbjct 39902 AATCTGGCGTCGGGTTTCCCGATGCTGACCACCAAGAAGCTTCATCTGAAATCGATCGTC 39961 Query 202660 CACGAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGG 202719 || || ||||||||||| ||| || |||||||| |||| ||| ||||||| ||||| Sbjct 39962 CATGAACTGCTGTGGTTTCTGGCGGGCGACACCAATATCAAGTACTTGAACGACAACGGC 40021 Query 202720 GTCACTATCTGGGACGAATGGGCG 202743 ||| |||||||| || |||||| Sbjct 40022 GTCCGCATCTGGGATGAGTGGGCG 40045 Score = 84.2 bits (92), Expect = 3e-11 Identities = 135/189 (71%), Gaps = 14/189 (7%) Strand=Plus/Plus Query 203290 CTATCGTGTCAGTTGTATCAGCG--CAGCGCCGATGTCTTCTTAGGCGTGCCGTTTAACA 203347 || || || ||| | || ||||| ||||| ||||||||| | ||||||||||| |||| Sbjct 40268 CTGTCCTGCCAGCTCTACCAGCGTTCAGCG--GATGTCTTCCTCGGCGTGCCGTTCAACA 40325 Query 203348 TCGCCTCGTATGCTTTACTGACTGAGATGGTTGCTCAGCAGGTCA---ACATGGTGGCCG 203404 |||| || ||||| | ||||| |||||| || |||||||| | || | ||| Sbjct 40326 TCGCGTCCTATGCGCTGCTGACAATGATGGTGGC---GCAGGTCACCGGCCTGAAGCCCG 40382 Query 203405 AGGAGTTCGTCTGGACAGGC--GGTGATACACATCTGTATTCCAACCATCTGGAGCAGGC 203462 || |||| || | || || ||| | ||||| ||||| ||||| || || ||||| Sbjct 40383 GCGATTTCG--TGCATTCGCTTGGCGATGCGCATCTTTATTCAAACCACCTCGACCAGGC 40440 Query 203463 CCGTCTGCA 203471 || ||||| Sbjct 40441 GCGGCTGCA 40449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787657486018000