Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq57661 93.3 6e-14 seq42187 93.3 6e-14 seq37095 93.3 6e-14 >seq57661 Length=1717 Score = 93.3 bits (102), Expect = 6e-14 Identities = 359/561 (64%), Gaps = 11/561 (2%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || ||||| || || || || || || || | || || | |||||| || | ||| Sbjct 1136 CAGGCAAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 1195 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 |||||||| || || || || ||||||||||| | || || ||| | || || ||||| Sbjct 1196 CCGGGCATCAGGCCGCGCTTCTTGAGCCAAAAGA-TGGAGCAGAAGCTGCCGGAGAAGAA 1254 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTC--------TC-CGTAACTGGCTTC 48310 ||||| || ||||| || ||| || | || | ||| || || || | | || Sbjct 1255 GATGCCCTCGACGGCGGCGAATCCGATGAGGCGCTCGGCGAAGGTCTCGGCACCGCCCTC 1314 Query 48311 GTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTAT 48370 |||| |||||| ||||| || || |||||||| || | |||| || || || Sbjct 1315 CTTGTTGATCCACTTCATGGCCCAGTCGGCTTTCTTCTTGACCGAGGGCACGGTCTCGAT 1374 Query 48371 AGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACT 48430 || ||||| || || || | || || ||||| || || || | || Sbjct 1375 GGCGCGGAAGAGGCGGTCCTTCTCGACGTGGTCCTTGACGTAGGTGTCGATGAGGAGCGA 1434 Query 48431 ATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTC 48490 ||||| |||||||| || || || || || || || || ||||| || || | ||| || Sbjct 1435 GTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGCAGCGCGCCTC 1494 Query 48491 TGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACT 48550 | | ||| |||||| | || || | || | ||||| || || || || || Sbjct 1495 GGGCACCTGGACCTCCATCATGAAGCGGCCGGCGAGGTTCTCGGCCACGATGCCGTCGCT 1554 Query 48551 AGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATT 48610 || || || || || | || || || || || | | |||| | | || | Sbjct 1555 GGCCGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTCGTTGCTGAGCGATTC 1614 Query 48611 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 ||||| || || || | ||| |||||||| || ||||| || || ||||| || Sbjct 1615 CCAGTGCTTCATGTCGGAGCTCAGATCGACTTCTTCGGCCGTCCAGAAGGAGGCCTCGGC 1674 Query 48671 TTTTTTATACATATTCCATAT 48691 || || ||||| | ||| || Sbjct 1675 CTTCTTGTACATCTCCCAGAT 1695 >seq42187 Length=1775 Score = 93.3 bits (102), Expect = 6e-14 Identities = 359/561 (64%), Gaps = 11/561 (2%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || ||||| || || || || || || || | || || | |||||| || | ||| Sbjct 582 CAGGCAAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 523 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 |||||||| || || || || ||||||||||| | || || ||| | || || ||||| Sbjct 522 CCGGGCATCAGGCCGCGCTTCTTGAGCCAAAAGA-TGGAGCAGAAGCTGCCGGAGAAGAA 464 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTC--------TC-CGTAACTGGCTTC 48310 ||||| || ||||| || ||| || | || | ||| || || || | | || Sbjct 463 GATGCCCTCGACGGCGGCGAATCCGATGAGGCGCTCGGCGAAGGTCTCGGCACCGCCCTC 404 Query 48311 GTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTAT 48370 |||| |||||| ||||| || || |||||||| || | |||| || || || Sbjct 403 CTTGTTGATCCACTTCATGGCCCAGTCGGCTTTCTTCTTGACCGAGGGCACGGTCTCGAT 344 Query 48371 AGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACT 48430 || ||||| || || || | || || ||||| || || || | || Sbjct 343 GGCGCGGAAGAGGCGGTCCTTCTCGACGTGGTCCTTGACGTAGGTGTCGATGAGGAGCGA 284 Query 48431 ATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTC 48490 ||||| |||||||| || || || || || || || || ||||| || || | ||| || Sbjct 283 GTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGCAGCGCGCCTC 224 Query 48491 TGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACT 48550 | | ||| |||||| | || || | || | ||||| || || || || || Sbjct 223 GGGCACCTGGACCTCCATCATGAAGCGGCCGGCGAGGTTCTCGGCCACGATGCCGTCGCT 164 Query 48551 AGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATT 48610 || || || || || | || || || || || | | |||| | | || | Sbjct 163 GGCCGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTCGTTGCTGAGCGATTC 104 Query 48611 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 ||||| || || || | ||| |||||||| || ||||| || || ||||| || Sbjct 103 CCAGTGCTTCATGTCGGAGCTCAGATCGACTTCTTCGGCCGTCCAGAAGGAGGCCTCGGC 44 Query 48671 TTTTTTATACATATTCCATAT 48691 || || ||||| | ||| || Sbjct 43 CTTCTTGTACATCTCCCAGAT 23 >seq37095 Length=1954 Score = 93.3 bits (102), Expect = 6e-14 Identities = 359/561 (64%), Gaps = 11/561 (2%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || ||||| || || || || || || || | || || | |||||| || | ||| Sbjct 1687 CAGGCAAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 1628 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 |||||||| || || || || ||||||||||| | || || ||| | || || ||||| Sbjct 1627 CCGGGCATCAGGCCGCGCTTCTTGAGCCAAAAGA-TGGAGCAGAAGCTGCCGGAGAAGAA 1569 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTC--------TC-CGTAACTGGCTTC 48310 ||||| || ||||| || ||| || | || | ||| || || || | | || Sbjct 1568 GATGCCCTCGACGGCGGCGAATCCGATGAGGCGCTCGGCGAAGGTCTCGGCACCGCCCTC 1509 Query 48311 GTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTAT 48370 |||| |||||| ||||| || || |||||||| || | |||| || || || Sbjct 1508 CTTGTTGATCCACTTCATGGCCCAGTCGGCTTTCTTCTTGACCGAGGGCACGGTCTCGAT 1449 Query 48371 AGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACT 48430 || ||||| || || || | || || ||||| || || || | || Sbjct 1448 GGCGCGGAAGAGGCGGTCCTTCTCGACGTGGTCCTTGACGTAGGTGTCGATGAGGAGCGA 1389 Query 48431 ATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTC 48490 ||||| |||||||| || || || || || || || || ||||| || || | ||| || Sbjct 1388 GTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGCAGCGCGCCTC 1329 Query 48491 TGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACT 48550 | | ||| |||||| | || || | || | ||||| || || || || || Sbjct 1328 GGGCACCTGGACCTCCATCATGAAGCGGCCGGCGAGGTTCTCGGCCACGATGCCGTCGCT 1269 Query 48551 AGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATT 48610 || || || || || | || || || || || | | |||| | | || | Sbjct 1268 GGCCGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTCGTTGCTGAGCGATTC 1209 Query 48611 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 ||||| || || || | ||| |||||||| || ||||| || || ||||| || Sbjct 1208 CCAGTGCTTCATGTCGGAGCTCAGATCGACTTCTTCGGCCGTCCAGAAGGAGGCCTCGGC 1149 Query 48671 TTTTTTATACATATTCCATAT 48691 || || ||||| | ||| || Sbjct 1148 CTTCTTGTACATCTCCCAGAT 1128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694084991657120