Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq42326 96.9 1e-15 seq63356 89.7 2e-13 >seq42326 Length=42801 Score = 96.9 bits (106), Expect = 1e-15 Identities = 174/249 (70%), Gaps = 4/249 (2%) Strand=Plus/Minus Query 31022 GCCTTAATGACCACACCGACGCCCTT-GGCTTCCAGGTGCTCGAACAGTGCGTCCGCGAT 31080 ||||| |||| ||| |||||||||| |||||| || |||| | | || ||||| Sbjct 35861 GCCTTGATGATCACGCCGACGCCCTGCGGCTTC-AGCACCTCGTCGATGGTGTTGGCGAT 35803 Query 31081 CTGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCGAGCATACATGTCCGCCAGGCGGGA 31140 ||| | || | | |||||| | |||||||| || ||| ||| ||| |||| Sbjct 35802 CTGCGCCGTCATCTTTTCCTGGATCTGCAGGCGCTTCGCGAACACGTCAACCACCCGGGC 35743 Query 31141 CAGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTA-GCTGATCGTGACCGTGCCGA 31199 |||||||| | ||| |||| || ||||| |||||||| ||| | || |||| |||| Sbjct 35742 AAGCTTGCTTATGCCGACGACGCGGCCGTTGGGAATGTACGCTACCCATGCCCGT-CCGA 35684 Query 31200 AGATCGGCGCGAGGTGATGCTCGCAATGTGAGTAGATGGGGATGTCGCGCACCGTCACCA 31259 ||||||||| | ||||||||||| || | | |||||| | |||| | | || Sbjct 35683 TGATCGGCGCCATATGATGCTCGCAGTGGCTCTCAAACGGGATGCCACGCAGCACAATCA 35624 Query 31260 TCTGGTCAT 31268 ||| ||||| Sbjct 35623 TCTCGTCAT 35615 >seq63356 Length=16168 Score = 89.7 bits (98), Expect = 2e-13 Identities = 175/256 (68%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 31022 GCCTTAATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCGAACAGTGCGTCCGCGATC 31081 |||| | ||| ||||||||||||| || | ||| || | | |||| ||||| Sbjct 5249 GCCTCGACGACGACACCGACGCCCTGGGGCTGGAGGACGTCCATGATGGCGTTGCCGATC 5190 Query 31082 TGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCGAGCATACATGTCCGCCAGGCGGGAC 31141 || | |||||||| ||||| | || ||||| || | |||| |||| | ||| | Sbjct 5189 TGCTGGGTGAGCCGCTCCTGGATCTGGAGGCGCCGCGAGAACATCTCCGAGACGCGTGCG 5130 Query 31142 AGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCTGATCGTG-ACCGTGCCGAA 31200 |||||||| ||||| | | ||| || ||||||| ||| ||| ||| ||||| | Sbjct 5129 AGCTTGCTGAGGCCGAGCACCTTCTTGTTGGGGATGTAGCCGAT-GTGCACCTTGCCGTA 5071 Query 31201 GATCGGCGCGAGGTGATGCTCGCAATGTGAGTAGATGGGGATGTCGCGCACCGTCACCAT 31260 || || | ||| |||||||| | ||| ||| | |||||||||||| | ||||| Sbjct 5070 GAAGGGGATCATGTGGTGCTCGCACAGCGAGAAGAGGTCGATGTCGCGCACGATGACCAT 5011 Query 31261 CTGGTCATGCTTCTCC 31276 | || || |||||| Sbjct 5010 GTCTTCGTGGTTCTCC 4995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187140069505088