Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq34497 161 6e-35 >seq34497 Length=166879 Score = 161 bits (178), Expect = 6e-35 Identities = 489/748 (65%), Gaps = 17/748 (2%) Strand=Plus/Plus Query 836 GATCGCACCGGCACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGACCTCACC 895 || |||||||| ||||| |||||| | ||||||| ||| |||||| | || | Sbjct 39851 GACCGCACCGGGACCGGAACGCTGTCCGTGTTCGGCCATCAGATGCGGTTTAATCTGGCG 39910 Query 896 GAGGGCTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTACGAACTT 955 ||| |||||| || | ||||| ||| | || | |||||| | | | ||||| Sbjct 39911 TCGGGTTTCCCGATGCTGACCACCAAGAAGCTTCATCTGAAATCGATCGTCCATGAACTG 39970 Query 956 CTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCGTCACCATC 1015 |||||||| || |||||||| || | ||| | ||||||||||||||| |||| Sbjct 39971 CTGTGGTTTCTGGCGGGCGACACCAATATCAAGTACTTGAACGACAACGGCGTCCGCATC 40030 Query 1016 TGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAGTGGCGG 1075 ||||| |||||||| |||| ||| || ||||| || || ||||| |||||||||| Sbjct 40031 TGGGATGAGTGGGCGGACGAAAACGGCAATCTCGGCCCCGTTTACGGATCGCAGTGGCGC 40090 Query 1076 CACTGGCATGTCGAGGACGGAGGATCGTCGTGGATTGACCAGATCTCGGCCGCCGTGGAG 1135 |||| | ||||||| || | || || ||||| || | | ||| Sbjct 40091 TCATGGCCCGCTCAGGACGGCGGCAC------AATCGATCAGATTTCCAACCTGATCGAG 40144 Query 1136 CTGCTTCGCGAGGACCCTGACTCGCGCCGGAACGTGGTATCCGCATGGAACGTCGGTGAC 1195 || | ||| | | || |||||||| || | || ||| ||||| | || Sbjct 40145 ATGATCCGCAAAAATCCGGACTCGCGACGCCTGATTGTGAGCGCCTGGAATCCGGCCGAA 40204 Query 1196 CTCAGCGACATGGCACTTCACCCGTGCCACATCATGTTCCAGCTGTACGTCGTCGACGGC 1255 || | | ||||| || | || ||||| | |||| ||| | || |||| | | ||| Sbjct 40205 GTCGACAAGATGGCGCTGCCGCCCTGCCATTGCTTGTTTCAGTTTTATGTCGCCAAGGGC 40264 Query 1256 CGGCTCTCGCTG-CAGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAA 1314 ||| || ||| ||| |||||||||| ||||| | |||||||| ||||||||||| Sbjct 40265 AAGCTGTC-CTGCCAGCTCTACCAGCGTTCAGCGGATGTCTTCCTCGGCGTGCCGTTCAA 40323 Query 1315 TATCGCCTCGTACGCGCTCCTCGCGCACATGTTCGCGCAGCAGGCCGGCCTGCGGGTGGG 1374 ||||| || || ||||| || | ||| | |||||| |||||||| | || Sbjct 40324 CATCGCGTCCTATGCGCTGCTGACAATGATGGTGGCGCAGGTCACCGGCCTGAAGCCCGG 40383 Query 1375 TGAGCTGATCTGGACCGGC--GGCGACTGC-CACATCTACAACAACCACGTCGACCAGGC 1431 || | || | || ||||| ||| || | || |||||| |||||||||| Sbjct 40384 CGA--TTTCGTGCATTCGCTTGGCGA-TGCGCATCTTTATTCAAACCACCTCGACCAGGC 40440 Query 1432 GCTGATGCAGCTCCGCCGACGACCGCGGCCCTACCCGAGGCTCGTGCT---ACACCACGC 1488 || | |||| ||| |||| |||| || | |||| | | | | | ||| Sbjct 40441 GCGGCTGCAACTCACGCGACCCACGCGTCCGTTGCCGACCATGAAGATCAATCCCGACGT 40500 Query 1489 GCCGTCGATCTTCGACTACCGGTACGAGCACATCCACCTCGTGAACTACGACCCGCACCC 1548 | | |||||| | ||| ||||| || || |||| ||||||||||||||| || Sbjct 40501 GAAGGATATCTTCTCGTTCCGCTACGAAGACTTCACGCTCGAGAACTACGACCCGCATCC 40560 Query 1549 GTCGATCAAGGCGCCGGTGGCCGTCTGA 1576 | |||||||| ||| || || ||| Sbjct 40561 GCACATCAAGGCTGAGGTCGCAGTGTGA 40588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 295888549446933