Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq38569 158 4e-34 >seq38569 Length=123680 Score = 158 bits (174), Expect = 4e-34 Identities = 245/343 (71%), Gaps = 8/343 (2%) Strand=Plus/Plus Query 40029 GGCTTGTCCAGCACGCGCGCCG-CGTCCTTCATCGCGTTGCGCGCCTTGATCCGACCGAA 40087 ||| | | ||||||||| |||| |||| || | || |||||||| | | ||||| Sbjct 60505 GGCATCTGCAGCACGCG-GCCGACGTCGCGCAGCACGCCGCGCGCCTGCAGCGTCCCGAA 60563 Query 40088 GGTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTGACGTACCTGATCACGTC 40147 ||| |||||| |||||| || ||||| ||| ||||| | ||| || || Sbjct 60564 GGTGATGATCTGCCCGACCTGCTCGCGGCCGTAGCGCTCCTGCACGTAGCGGATGACCTC 60623 Query 40148 GCCCCGTCG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGG 40205 ||| || || || | || |||||||||||| | ||| ||||| |||||||| || || Sbjct 60624 GCCGCGGCGATCCTGACA--GAAGTCGATGTCGAAGTCCGGCATCGACACGCGTTCCGGA 60681 Query 40206 TTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAG- 40264 || ||||| |||||||| | || ||| | |||| || || ||||| || ||| || Sbjct 60682 TTGAGGAAGCGCTCGAACAGCAGGCCGAACCGGATCGGATCGAGGTCGGTAATGGTCAGC 60741 Query 40265 GCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTT 40324 ||| |||||||||||||| || || |||| || || || || |||||| | ||| | Sbjct 60742 GCA-TAGGCGACCAGCGAGCCCGCGCCCGAACCGCGGCCCGGCCCGACCGGAATGCCCTG 60800 Query 40325 CTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAG 40367 |||||||||| ||||||||| | |||| |||||||||| Sbjct 60801 GGCCTTGGCCCACTTGATGAAGTCCGACACGATCAGGAAGTAG 60843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160012944886424