Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_031080.1 Length=160985 Score E Sequences producing significant alignments: (Bits) Value seq38569 100 3e-16 >seq38569 Length=123680 Score = 100 bits (110), Expect = 3e-16 Identities = 127/170 (75%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 120444 CCAAG-CCCAAGCCGTGCCTGTGCGGGCCGGGCCGTGGATCCGCCGGAGGCTCGCTGGTC 120502 ||||| |||| | | | || || |||||||||||| || || | || |||||||||||| Sbjct 60808 CCAAGGCCCAGGGCATTCCGGT-CGGGCCGGGCCGCGGTTCGGGCGCGGGCTCGCTGGTC 60750 Query 120503 ACCTACGTCATGGGCATCACCTCGATCGATCCGATCAAGTACGACCTGATGTTCGAGCGC 120562 |||| | || ||| ||| ||||||||||| || || |||| ||||||||||| Sbjct 60749 GCCTATGCGCTGACCATTACCGACCTCGATCCGATCCGGTTCGGCCTGCTGTTCGAGCGC 60690 Query 120563 TTCATCAACCCGGATCGC--CCCGACTTTCCCGACATCGACGTCGACTTC 120610 ||| |||| ||||| ||| ||| | || ||| ||||| |||||||| Sbjct 60689 TTCCTCAATCCGGAACGCGTGTCGA--TGCCGGACTTCGACATCGACTTC 60642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514591167392600