Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20mauritaniensis_20[genbank_20GCA_5F000826465.1_202015- 01-07] 67,233 sequences; 106,836,370 total letters Query= NC_031126.1 Length=244840 Score E Sequences producing significant alignments: (Bits) Value seq34497 95.1 2e-14 >seq34497 Length=166879 Score = 95.1 bits (104), Expect = 2e-14 Identities = 181/264 (69%), Gaps = 7/264 (3%) Strand=Plus/Plus Query 200041 ATGAACCAGTATCTC-ATCCTCCTAAATCAAGTC-CGTCGCGACGGGCATGTAAAGAAAG 200098 ||||||||||||| | ||| | | || || || || ||||||| | ||||| | Sbjct 39794 ATGAACCAGTATCACGATCTGCTTGAACGAATTCTCG--GCGACGGCGCGGAAAAGACCG 39851 Query 200099 ACCGTACCGGTANNNNNACCACGTCTATTTTCGGTGCACAGATGCGCTTCAATCTACAAG 200158 |||| ||||| | || ||| | ||||| |||||||| || ||||| Sbjct 39852 ACCGCACCGGGACCGGAACGCTGTCCGTGTTCGGCCATCAGATGCGGTTTAATCTGGCGT 39911 Query 200159 ACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTCCGTTCCATCATTCACGAGCTGT 200218 || ||||| || |||| ||||||||| ||||| || ||| | || || ||| Sbjct 39912 CGGGTTTCCCGATGCTGACCACCAAGAAGCTTCATCTGAAATCGATCGTCCATGAACTGC 39971 Query 200219 TGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTGAACGATAACAATGTCACCATTT 200278 ||||||| || || ||||||||||||||||| ||||||| ||| ||| ||| | Sbjct 39972 TGTGGTTTCTGGCGGGCGACACCAATATCAAGTACTTGAACGACAACGGCGTCCGCATCT 40031 Query 200279 GGGACGAATGGGCGCGAGACGAAA 200302 |||| || |||||| ||||||| Sbjct 40032 GGGATGAGTGGGCG---GACGAAA 40052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 782701654464000